Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP4Q99727 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP4Q99727 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP4Q99727 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
TIMP4Q99727 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
TIMP4Q99727 AC242852.2-201ENST00000615738 1807 ntBASIC19.97■□□□□ 0.79
TIMP4Q99727 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP4Q99727 AC007375.3-201ENST00000600936 2314 ntBASIC19.97■□□□□ 0.79
TIMP4Q99727 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP4Q99727 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
TIMP4Q99727 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TIMP4Q99727 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP4Q99727 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
TIMP4Q99727 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP4Q99727 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.97■□□□□ 0.79
TIMP4Q99727 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.97■□□□□ 0.79
TIMP4Q99727 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP4Q99727 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP4Q99727 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.96■□□□□ 0.79
TIMP4Q99727 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.96■□□□□ 0.79
TIMP4Q99727 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP4Q99727 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.96■□□□□ 0.79
TIMP4Q99727 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TIMP4Q99727 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP4Q99727 OR2I1P-207ENST00000453522 948 ntBASIC19.96■□□□□ 0.79
TIMP4Q99727 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
TIMP4Q99727 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TIMP4Q99727 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP4Q99727 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.96■□□□□ 0.79
TIMP4Q99727 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
TIMP4Q99727 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.95■□□□□ 0.78
TIMP4Q99727 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.95■□□□□ 0.78
TIMP4Q99727 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TIMP4Q99727 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TIMP4Q99727 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.95■□□□□ 0.78
TIMP4Q99727 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
TIMP4Q99727 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.95■□□□□ 0.78
TIMP4Q99727 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.95■□□□□ 0.78
TIMP4Q99727 AC010525.1-201ENST00000585559 441 ntBASIC19.95■□□□□ 0.78
TIMP4Q99727 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.95■□□□□ 0.78
TIMP4Q99727 ESRRAP2-201ENST00000418437 1549 ntBASIC19.95■□□□□ 0.78
TIMP4Q99727 TSPY26P-201ENST00000476365 1326 ntBASIC19.95■□□□□ 0.78
TIMP4Q99727 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TIMP4Q99727 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TIMP4Q99727 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.94■□□□□ 0.78
TIMP4Q99727 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.94■□□□□ 0.78
TIMP4Q99727 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TIMP4Q99727 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
TIMP4Q99727 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.94■□□□□ 0.78
TIMP4Q99727 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.94■□□□□ 0.78
TIMP4Q99727 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TIMP4Q99727 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
TIMP4Q99727 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
TIMP4Q99727 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TIMP4Q99727 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TIMP4Q99727 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.93■□□□□ 0.78
TIMP4Q99727 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TIMP4Q99727 AL353803.4-201ENST00000565882 1934 ntBASIC19.93■□□□□ 0.78
TIMP4Q99727 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.93■□□□□ 0.78
TIMP4Q99727 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.92■□□□□ 0.78
TIMP4Q99727 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TIMP4Q99727 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.92■□□□□ 0.78
TIMP4Q99727 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TIMP4Q99727 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TIMP4Q99727 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TIMP4Q99727 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.92■□□□□ 0.78
TIMP4Q99727 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.92■□□□□ 0.78
TIMP4Q99727 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.92■□□□□ 0.78
TIMP4Q99727 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TIMP4Q99727 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TIMP4Q99727 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TIMP4Q99727 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TIMP4Q99727 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
TIMP4Q99727 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.91■□□□□ 0.78
TIMP4Q99727 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.91■□□□□ 0.78
TIMP4Q99727 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.91■□□□□ 0.78
TIMP4Q99727 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TIMP4Q99727 IGHV3-19-201ENST00000521488 291 ntBASIC19.91■□□□□ 0.78
TIMP4Q99727 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.91■□□□□ 0.78
TIMP4Q99727 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.91■□□□□ 0.78
TIMP4Q99727 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.91■□□□□ 0.78
TIMP4Q99727 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 MIR6821-201ENST00000617625 74 ntBASIC19.91■□□□□ 0.78
TIMP4Q99727 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TIMP4Q99727 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms