Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 AL358852.1-201ENST00000623174 1268 ntBASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 AC027612.3-201ENST00000413684 1047 ntBASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.89■■□□□ 1.74
NKX2-3Q8TAU0 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.89■■□□□ 1.73
NKX2-3Q8TAU0 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.73
NKX2-3Q8TAU0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 AC126544.1-201ENST00000580842 1059 ntBASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
NKX2-3Q8TAU0 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 LINC01960-201ENST00000563759 1884 ntBASIC25.87■■□□□ 1.73
NKX2-3Q8TAU0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 TSPY26P-201ENST00000476365 1326 ntBASIC25.86■■□□□ 1.73
NKX2-3Q8TAU0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NKX2-3Q8TAU0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.84■■□□□ 1.73
NKX2-3Q8TAU0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NKX2-3Q8TAU0 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.72
NKX2-3Q8TAU0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 NTF6G-201ENST00000591094 616 ntBASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
NKX2-3Q8TAU0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms