Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.05■□□□□ 0.96
HNF4AP41235 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HNF4AP41235 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.05■□□□□ 0.96
HNF4AP41235 AC024257.2-201ENST00000549699 147 ntBASIC21.05■□□□□ 0.96
HNF4AP41235 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HNF4AP41235 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HNF4AP41235 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.05■□□□□ 0.96
HNF4AP41235 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HNF4AP41235 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HNF4AP41235 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.05■□□□□ 0.96
HNF4AP41235 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HNF4AP41235 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.04■□□□□ 0.96
HNF4AP41235 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.04■□□□□ 0.96
HNF4AP41235 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HNF4AP41235 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
HNF4AP41235 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HNF4AP41235 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HNF4AP41235 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
HNF4AP41235 OR2I1P-207ENST00000453522 948 ntBASIC21.04■□□□□ 0.96
HNF4AP41235 PBX2P1-201ENST00000493219 1291 ntBASIC21.04■□□□□ 0.96
HNF4AP41235 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HNF4AP41235 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.04■□□□□ 0.96
HNF4AP41235 AC068587.7-201ENST00000641602 218 ntBASIC21.04■□□□□ 0.96
HNF4AP41235 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HNF4AP41235 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HNF4AP41235 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
HNF4AP41235 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
HNF4AP41235 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.03■□□□□ 0.96
HNF4AP41235 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.03■□□□□ 0.96
HNF4AP41235 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 AC110285.6-201ENST00000617652 491 ntBASIC21.03■□□□□ 0.96
HNF4AP41235 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.03■□□□□ 0.96
HNF4AP41235 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.03■□□□□ 0.96
HNF4AP41235 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HNF4AP41235 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.03■□□□□ 0.96
HNF4AP41235 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 AC135279.3-201ENST00000610945 1311 ntBASIC21.03■□□□□ 0.96
HNF4AP41235 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HNF4AP41235 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HNF4AP41235 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.02■□□□□ 0.96
HNF4AP41235 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.02■□□□□ 0.96
HNF4AP41235 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.02■□□□□ 0.96
HNF4AP41235 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HNF4AP41235 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.02■□□□□ 0.95
HNF4AP41235 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.02■□□□□ 0.95
HNF4AP41235 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
HNF4AP41235 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 AC011298.3-201ENST00000615796 283 ntBASIC21.01■□□□□ 0.95
HNF4AP41235 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HNF4AP41235 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.01■□□□□ 0.95
HNF4AP41235 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HNF4AP41235 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21■□□□□ 0.95
HNF4AP41235 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21■□□□□ 0.95
HNF4AP41235 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21■□□□□ 0.95
HNF4AP41235 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21■□□□□ 0.95
HNF4AP41235 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21■□□□□ 0.95
HNF4AP41235 MIR4767-201ENST00000582827 78 ntBASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms