Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
USF1P22415 ID1-201ENST00000376105 1233 ntBASIC18.39■□□□□ 0.53
USF1P22415 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
USF1P22415 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.39■□□□□ 0.53
USF1P22415 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.39■□□□□ 0.53
USF1P22415 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.39■□□□□ 0.53
USF1P22415 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USF1P22415 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
USF1P22415 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.38■□□□□ 0.53
USF1P22415 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
USF1P22415 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
USF1P22415 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.38■□□□□ 0.53
USF1P22415 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.38■□□□□ 0.53
USF1P22415 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.38■□□□□ 0.53
USF1P22415 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.38■□□□□ 0.53
USF1P22415 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
USF1P22415 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
USF1P22415 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USF1P22415 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
USF1P22415 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
USF1P22415 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
USF1P22415 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
USF1P22415 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.37■□□□□ 0.53
USF1P22415 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.37■□□□□ 0.53
USF1P22415 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
USF1P22415 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.37■□□□□ 0.53
USF1P22415 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.37■□□□□ 0.53
USF1P22415 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
USF1P22415 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.36■□□□□ 0.53
USF1P22415 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USF1P22415 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.36■□□□□ 0.53
USF1P22415 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USF1P22415 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
USF1P22415 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USF1P22415 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.36■□□□□ 0.53
USF1P22415 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.36■□□□□ 0.53
USF1P22415 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
USF1P22415 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USF1P22415 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USF1P22415 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.35■□□□□ 0.53
USF1P22415 AC016769.1-201ENST00000409132 1010 ntBASIC18.35■□□□□ 0.53
USF1P22415 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.35■□□□□ 0.53
USF1P22415 AC068587.7-201ENST00000641602 218 ntBASIC18.35■□□□□ 0.53
USF1P22415 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USF1P22415 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.35■□□□□ 0.53
USF1P22415 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
USF1P22415 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.34■□□□□ 0.53
USF1P22415 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
USF1P22415 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.34■□□□□ 0.53
USF1P22415 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.34■□□□□ 0.53
USF1P22415 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.34■□□□□ 0.53
USF1P22415 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.34■□□□□ 0.53
USF1P22415 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.34■□□□□ 0.53
USF1P22415 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.34■□□□□ 0.53
USF1P22415 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.34■□□□□ 0.53
USF1P22415 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF1P22415 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF1P22415 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF1P22415 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF1P22415 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
USF1P22415 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USF1P22415 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms