Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.73■■□□□ 1.71
HMGB1P09429 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
HMGB1P09429 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
HMGB1P09429 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
HMGB1P09429 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGB1P09429 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
HMGB1P09429 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGB1P09429 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
HMGB1P09429 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
HMGB1P09429 SLC47A1P1-202ENST00000449666 945 ntBASIC25.72■■□□□ 1.71
HMGB1P09429 AC010141.3-201ENST00000456659 717 ntBASIC25.72■■□□□ 1.71
HMGB1P09429 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
HMGB1P09429 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
HMGB1P09429 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
HMGB1P09429 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
HMGB1P09429 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
HMGB1P09429 C11orf96-202ENST00000528572 1834 ntBASIC25.72■■□□□ 1.71
HMGB1P09429 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC25.72■■□□□ 1.71
HMGB1P09429 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.72■■□□□ 1.71
HMGB1P09429 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGB1P09429 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
HMGB1P09429 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGB1P09429 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGB1P09429 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
HMGB1P09429 AL136162.1-201ENST00000607711 1078 ntBASIC25.71■■□□□ 1.71
HMGB1P09429 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
HMGB1P09429 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
HMGB1P09429 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC25.7■■□□□ 1.71
HMGB1P09429 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC25.7■■□□□ 1.71
HMGB1P09429 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.7■■□□□ 1.71
HMGB1P09429 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
HMGB1P09429 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.7■■□□□ 1.7
HMGB1P09429 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.7■■□□□ 1.7
HMGB1P09429 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.7■■□□□ 1.7
HMGB1P09429 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
HMGB1P09429 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 AC135279.3-201ENST00000610945 1311 ntBASIC25.69■■□□□ 1.7
HMGB1P09429 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.69■■□□□ 1.7
HMGB1P09429 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 AC024257.2-201ENST00000549699 147 ntBASIC25.69■■□□□ 1.7
HMGB1P09429 MIR4767-201ENST00000582827 78 ntBASIC25.69■■□□□ 1.7
HMGB1P09429 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.69■■□□□ 1.7
HMGB1P09429 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGB1P09429 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
HMGB1P09429 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
HMGB1P09429 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
HMGB1P09429 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.68■■□□□ 1.7
HMGB1P09429 BX842568.3-201ENST00000418104 571 ntBASIC25.68■■□□□ 1.7
HMGB1P09429 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
HMGB1P09429 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HMGB1P09429 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
HMGB1P09429 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
HMGB1P09429 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HMGB1P09429 OXCT2P1-201ENST00000447263 1535 ntBASIC25.68■■□□□ 1.7
HMGB1P09429 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.67■■□□□ 1.7
HMGB1P09429 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGB1P09429 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGB1P09429 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
HMGB1P09429 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.67■■□□□ 1.7
HMGB1P09429 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
HMGB1P09429 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGB1P09429 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGB1P09429 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
HMGB1P09429 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
HMGB1P09429 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
HMGB1P09429 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
HMGB1P09429 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.66■■□□□ 1.7
HMGB1P09429 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.66■■□□□ 1.7
HMGB1P09429 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.66■■□□□ 1.7
HMGB1P09429 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
HMGB1P09429 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
HMGB1P09429 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
HMGB1P09429 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
HMGB1P09429 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.65■■□□□ 1.7
HMGB1P09429 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.65■■□□□ 1.7
HMGB1P09429 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HMGB1P09429 AC096631.2-201ENST00000436136 790 ntBASIC25.65■■□□□ 1.7
HMGB1P09429 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.65■■□□□ 1.7
HMGB1P09429 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HMGB1P09429 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
HMGB1P09429 LINC00565-201ENST00000562710 2331 ntBASIC25.65■■□□□ 1.7
HMGB1P09429 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HMGB1P09429 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
HMGB1P09429 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
HMGB1P09429 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
HMGB1P09429 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
HMGB1P09429 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.64■■□□□ 1.7
HMGB1P09429 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms