Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RBCK1-209ENST00000415942 2613 ntTSL 518.78■□□□□ 0.62e-7■■■■□ 20.5
SMNDC1O75940 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.24■□□□□ 0.512e-7■■■■□ 20.5
SMNDC1O75940 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.472e-7■■■■□ 20.5
SMNDC1O75940 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.85■□□□□ 0.292e-7■■■■□ 20.5
SMNDC1O75940 RBCK1-204ENST00000382214 2752 ntTSL 1 (best)16.03■□□□□ 0.162e-7■■■■□ 20.5
SMNDC1O75940 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.689e-7■■■■□ 20.5
SMNDC1O75940 ACAP3-208ENST00000472541 1946 ntTSL 518.31■□□□□ 0.529e-7■■■■□ 20.5
SMNDC1O75940 ACAP3-211ENST00000479108 485 ntTSL 313.81□□□□□ -0.29e-7■■■■□ 20.5
SMNDC1O75940 ACAP3-203ENST00000354980 582 ntTSL 512.39□□□□□ -0.439e-7■■■■□ 20.5
SMNDC1O75940 ACAP3-205ENST00000438966 265 ntTSL 36.61□□□□□ -1.359e-7■■■■□ 20.5
SMNDC1O75940 ACADM-211ENST00000528016 546 ntTSL 416.52■□□□□ 0.245e-74■■■■□ 20.5
SMNDC1O75940 SNORD45C-201ENST00000383893 79 ntBASIC-1.22□□□□□ -2.65e-74■■■■□ 20.5
SMNDC1O75940 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.1■□□□□ 0.171e-9■■■■□ 20.5
SMNDC1O75940 FAR1-201ENST00000354817 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.511e-6■■■■□ 20.4
SMNDC1O75940 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.4□□□□□ -2.031e-6■■■■□ 20.4
SMNDC1O75940 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.212e-15■■■■□ 20.4
SMNDC1O75940 ALDOA-208ENST00000562679 906 ntTSL 512.89□□□□□ -0.353e-7■■■■□ 20.4
SMNDC1O75940 WDR6-218ENST00000492780 537 ntTSL 212.24□□□□□ -0.453e-19■■■■□ 20.4
SMNDC1O75940 COL18A1-206ENST00000459895 588 ntTSL 311.41□□□□□ -0.583e-10■■■■□ 20.4
SMNDC1O75940 ACTB-212ENST00000484841 1032 ntTSL 518.25■□□□□ 0.513e-14■■■■□ 20.3
SMNDC1O75940 ACTB-210ENST00000477812 820 ntTSL 217.62■□□□□ 0.413e-14■■■■□ 20.3
SMNDC1O75940 ACTB-207ENST00000462494 2245 ntTSL 517.36■□□□□ 0.373e-14■■■■□ 20.3
SMNDC1O75940 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.323e-14■■■■□ 20.3
SMNDC1O75940 ACTB-205ENST00000432588 568 ntTSL 414.64□□□□□ -0.073e-14■■■■□ 20.3
SMNDC1O75940 ACTB-204ENST00000425660 1845 ntTSL 1 (best)14.11□□□□□ -0.153e-14■■■■□ 20.3
SMNDC1O75940 ACTB-209ENST00000473257 556 ntTSL 310.17□□□□□ -0.783e-14■■■■□ 20.3
SMNDC1O75940 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.1■□□□□ 0.331e-6■■■■□ 20.3
SMNDC1O75940 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.061e-6■■■■□ 20.3
SMNDC1O75940 FBRSL1-204ENST00000539264 409 ntTSL 221.4■■□□□ 1.023e-6■■■■□ 20.3
SMNDC1O75940 FBRSL1-207ENST00000543360 238 ntTSL 221.22■□□□□ 0.993e-6■■■■□ 20.3
SMNDC1O75940 MICALL2-211ENST00000487156 874 ntTSL 517.36■□□□□ 0.372e-8■■■■□ 20.3
SMNDC1O75940 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.272e-7■■■■□ 20.3
SMNDC1O75940 ERF-206ENST00000596818 566 ntTSL 314.63□□□□□ -0.072e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.92□□□□□ -0.029e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-227ENST00000557268 2013 ntTSL 212.69□□□□□ -0.389e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-202ENST00000334743 4328 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.669e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-203ENST00000350249 3845 ntTSL 1 (best) BASIC10.29□□□□□ -0.769e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-201ENST00000328724 4045 ntTSL 2 BASIC9.61□□□□□ -0.879e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-229ENST00000557621 759 ntTSL 58.77□□□□□ -1.019e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC8.17□□□□□ -1.19e-7■■■■□ 20.3
SMNDC1O75940 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.91□□□□□ -1.149e-7■■■■□ 20.3
SMNDC1O75940 RBM6-202ENST00000419610 2128 ntTSL 220.59■□□□□ 0.894e-8■■■■□ 20.3
SMNDC1O75940 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.21■□□□□ 0.834e-8■■■■□ 20.3
SMNDC1O75940 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.61■□□□□ 0.414e-8■■■■□ 20.3
SMNDC1O75940 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.386e-6■■■■□ 20.3
SMNDC1O75940 NCL-205ENST00000453992 964 ntTSL 417.14■□□□□ 0.332e-30■■■■□ 20.3
SMNDC1O75940 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.326e-6■■■■□ 20.3
SMNDC1O75940 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.84■□□□□ 0.296e-6■■■■□ 20.3
SMNDC1O75940 RBM6-209ENST00000441115 1876 ntTSL 216.84■□□□□ 0.294e-8■■■■□ 20.3
SMNDC1O75940 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.084e-8■■■■□ 20.3
SMNDC1O75940 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC14.37□□□□□ -0.114e-8■■■■□ 20.3
SMNDC1O75940 RBM6-213ENST00000454079 4324 ntTSL 211.47□□□□□ -0.574e-8■■■■□ 20.3
SMNDC1O75940 VAV2-205ENST00000486113 523 ntTSL 211.38□□□□□ -0.596e-6■■■■□ 20.3
SMNDC1O75940 NCL-204ENST00000436894 562 ntTSL 46.58□□□□□ -1.362e-30■■■■□ 20.3
SMNDC1O75940 RBM6-207ENST00000434592 2342 ntTSL 26.44□□□□□ -1.384e-8■■■■□ 20.3
SMNDC1O75940 NCL-203ENST00000417652 568 ntTSL 46.2□□□□□ -1.422e-30■■■■□ 20.3
SMNDC1O75940 NADK-205ENST00000460602 974 ntTSL 223.04■■□□□ 1.282e-6■■■■□ 20.2
SMNDC1O75940 SETD5-218ENST00000466826 284 ntTSL 23.02□□□□□ -1.931e-12■■■■□ 20.2
SMNDC1O75940 EEF1A1-205ENST00000455918 701 ntTSL 217.95■□□□□ 0.467e-9■■■■□ 20.2
SMNDC1O75940 SEMA4C-206ENST00000482925 3776 ntTSL 214.25□□□□□ -0.136e-8■■■■□ 20.2
SMNDC1O75940 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.599e-7■■■■□ 20.2
SMNDC1O75940 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.47■■□□□ 1.519e-21■■■■□ 20.2
SMNDC1O75940 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.03■□□□□ 0.649e-21■■■■□ 20.2
SMNDC1O75940 KANSL2-202ENST00000546701 1881 ntTSL 29.08□□□□□ -0.969e-21■■■■□ 20.2
SMNDC1O75940 KANSL2-201ENST00000420613 2155 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.969e-21■■■■□ 20.2
SMNDC1O75940 KANSL2-206ENST00000548147 1514 ntTSL 28.63□□□□□ -1.039e-21■■■■□ 20.2
SMNDC1O75940 KANSL2-203ENST00000547087 831 ntTSL 37.16□□□□□ -1.269e-21■■■■□ 20.2
SMNDC1O75940 KANSL2-211ENST00000549574 1625 ntTSL 57.06□□□□□ -1.289e-21■■■■□ 20.2
SMNDC1O75940 MIR3064-201ENST00000581130 66 ntBASIC1.92□□□□□ -2.17e-28■■■■□ 20.2
SMNDC1O75940 SNORD88A-201ENST00000408314 91 ntBASIC8.19□□□□□ -1.12e-45■■■■□ 20.2
SMNDC1O75940 CSE1L-201ENST00000262982 3553 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.535e-7■■■■□ 20.1
SMNDC1O75940 CSE1L-202ENST00000396192 3459 ntTSL 5 BASIC10.43□□□□□ -0.745e-7■■■■□ 20.1
SMNDC1O75940 CSE1L-203ENST00000469700 1401 ntTSL 1 (best)5.4□□□□□ -1.545e-7■■■■□ 20.1
SMNDC1O75940 MICALL2-202ENST00000413446 3046 ntTSL 214.56□□□□□ -0.089e-7■■■■□ 20.1
SMNDC1O75940 DGCR8-204ENST00000457069 770 ntTSL 315.87■□□□□ 0.133e-7■■■■□ 20.1
SMNDC1O75940 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.731e-6■■■■□ 20
SMNDC1O75940 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.622e-8■■■■□ 20
SMNDC1O75940 SBNO2-207ENST00000590176 561 ntTSL 416.95■□□□□ 0.32e-8■■■■□ 20
SMNDC1O75940 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.32e-8■■■■□ 20
SMNDC1O75940 SLC16A3-215ENST00000582946 586 ntTSL 415.26■□□□□ 0.032e-6■■■■□ 20
SMNDC1O75940 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.036e-6■■■■□ 20
SMNDC1O75940 SLC16A3-207ENST00000578810 678 ntTSL 214.14□□□□□ -0.152e-6■■■■□ 20
SMNDC1O75940 CLK4-210ENST00000522136 1955 ntTSL 1 (best)11.87□□□□□ -0.516e-6■■■■□ 20
SMNDC1O75940 CLK4-206ENST00000520878 3722 ntTSL 1 (best)11.16□□□□□ -0.626e-6■■■■□ 20
SMNDC1O75940 CLK4-215ENST00000611733 2182 ntTSL 5 BASIC10.65□□□□□ -0.716e-6■■■■□ 20
SMNDC1O75940 ITPR2-203ENST00000451599 2577 ntTSL 1 (best)10.61□□□□□ -0.712e-8■■■■□ 20
SMNDC1O75940 CCDC93-206ENST00000470650 282 ntTSL 39□□□□□ -0.972e-8■■■■□ 20
SMNDC1O75940 CCDC93-208ENST00000474546 452 ntTSL 38.61□□□□□ -1.032e-8■■■■□ 20
SMNDC1O75940 CLK4-209ENST00000521621 2780 ntTSL 1 (best)8.36□□□□□ -1.076e-6■■■■□ 20
SMNDC1O75940 ORC2-204ENST00000464147 2185 ntTSL 58.16□□□□□ -1.12e-8■■■■□ 20
SMNDC1O75940 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.65□□□□□ -1.192e-8■■■■□ 20
SMNDC1O75940 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.192e-8■■■■□ 20
SMNDC1O75940 CLK4-203ENST00000519583 3462 ntTSL 1 (best)7.55□□□□□ -1.26e-6■■■■□ 20
SMNDC1O75940 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC7.28□□□□□ -1.246e-6■■■■□ 20
SMNDC1O75940 CCDC93-203ENST00000437999 850 ntTSL 36.33□□□□□ -1.42e-8■■■■□ 20
SMNDC1O75940 CLK4-212ENST00000522749 572 ntTSL 35.71□□□□□ -1.56e-6■■■■□ 20
SMNDC1O75940 GSE1-216ENST00000637419 2683 ntTSL 521.25■□□□□ 0.991e-6■■■■□ 20
SMNDC1O75940 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.12e-7■■■■□ 20
SMNDC1O75940 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-7■■■■□ 20
SMNDC1O75940 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.942e-7■■■■□ 19.9
Retrieved 100 of 11,362 protein–RNA pairs in 107.6 ms