Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.59■□□□□ 0.73
SSX4O60224 AC133561.4-201ENST00000566112 224 ntBASIC19.59■□□□□ 0.73
SSX4O60224 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.59■□□□□ 0.73
SSX4O60224 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.59■□□□□ 0.73
SSX4O60224 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SSX4O60224 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SSX4O60224 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SSX4O60224 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SSX4O60224 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SSX4O60224 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SSX4O60224 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SSX4O60224 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SSX4O60224 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 AC139530.1-201ENST00000575312 1977 ntBASIC19.57■□□□□ 0.72
SSX4O60224 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SSX4O60224 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SSX4O60224 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 AC106739.1-201ENST00000617035 715 ntBASIC19.57■□□□□ 0.72
SSX4O60224 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SSX4O60224 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.57■□□□□ 0.72
SSX4O60224 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SSX4O60224 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SSX4O60224 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 UNC93B3-201ENST00000308076 687 ntBASIC19.56■□□□□ 0.72
SSX4O60224 SRD5A1P1-201ENST00000442297 786 ntBASIC19.56■□□□□ 0.72
SSX4O60224 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.56■□□□□ 0.72
SSX4O60224 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX4O60224 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.56■□□□□ 0.72
SSX4O60224 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.56■□□□□ 0.72
SSX4O60224 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SSX4O60224 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SSX4O60224 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.56■□□□□ 0.72
SSX4O60224 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SSX4O60224 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SSX4O60224 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SSX4O60224 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SSX4O60224 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.55■□□□□ 0.72
SSX4O60224 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SSX4O60224 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SSX4O60224 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.55■□□□□ 0.72
SSX4O60224 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.55■□□□□ 0.72
SSX4O60224 AC142381.2-201ENST00000566120 298 ntBASIC19.55■□□□□ 0.72
SSX4O60224 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SSX4O60224 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.55■□□□□ 0.72
SSX4O60224 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX4O60224 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX4O60224 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SSX4O60224 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.54■□□□□ 0.72
SSX4O60224 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SSX4O60224 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
SSX4O60224 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SSX4O60224 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.53■□□□□ 0.72
SSX4O60224 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.53■□□□□ 0.72
SSX4O60224 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.53■□□□□ 0.72
SSX4O60224 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SSX4O60224 AL136162.1-201ENST00000607711 1078 ntBASIC19.53■□□□□ 0.72
SSX4O60224 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SSX4O60224 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
SSX4O60224 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX4O60224 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.53■□□□□ 0.72
SSX4O60224 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.53■□□□□ 0.72
SSX4O60224 AC005229.4-201ENST00000610085 2198 ntBASIC19.53■□□□□ 0.72
SSX4O60224 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SSX4O60224 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms