Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC099791.1-201ENST00000416440 715 ntBASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 BX842568.3-201ENST00000418104 571 ntBASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHB3Q9Y5E6 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 AC233992.3-201ENST00000607491 485 ntBASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
PCDHB3Q9Y5E6 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 ESRRAP2-201ENST00000418437 1549 ntBASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
PCDHB3Q9Y5E6 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 FP325331.1-202ENST00000623531 1380 ntBASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 AC242852.2-201ENST00000615738 1807 ntBASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHB3Q9Y5E6 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.28■■□□□ 1
PCDHB3Q9Y5E6 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHB3Q9Y5E6 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCDHB3Q9Y5E6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
PCDHB3Q9Y5E6 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
PCDHB3Q9Y5E6 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.26■□□□□ 0.99
PCDHB3Q9Y5E6 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHB3Q9Y5E6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDHB3Q9Y5E6 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.26■□□□□ 0.99
PCDHB3Q9Y5E6 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDHB3Q9Y5E6 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHB3Q9Y5E6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHB3Q9Y5E6 AL499627.2-201ENST00000606283 725 ntBASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms