Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PCGF1Q9BSM1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
PCGF1Q9BSM1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCGF1Q9BSM1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 AL353803.4-201ENST00000565882 1934 ntBASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 LINC00565-201ENST00000562710 2331 ntBASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PCGF1Q9BSM1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.17■□□□□ 0.5
PCGF1Q9BSM1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.16■□□□□ 0.5
PCGF1Q9BSM1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 IRS3P-201ENST00000223076 1006 ntBASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 AC010525.1-201ENST00000585559 441 ntBASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 TSPY26P-201ENST00000476365 1326 ntBASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PCGF1Q9BSM1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.14■□□□□ 0.5
PCGF1Q9BSM1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms