Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MIR6089-201ENST00000616698 64 ntBASIC21.9■■□□□ 1.1
VPS13AQ96RL7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS13AQ96RL7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS13AQ96RL7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS13AQ96RL7 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
VPS13AQ96RL7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS13AQ96RL7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS13AQ96RL7 AC007322.1-201ENST00000426983 750 ntBASIC21.88■■□□□ 1.09
VPS13AQ96RL7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS13AQ96RL7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS13AQ96RL7 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS13AQ96RL7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VPS13AQ96RL7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 AC128676.1-201ENST00000454392 318 ntBASIC21.87■■□□□ 1.09
VPS13AQ96RL7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.87■■□□□ 1.09
VPS13AQ96RL7 AC008550.1-201ENST00000511500 884 ntBASIC21.87■■□□□ 1.09
VPS13AQ96RL7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS13AQ96RL7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 AC006058.3-201ENST00000606217 1069 ntBASIC21.86■■□□□ 1.09
VPS13AQ96RL7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
VPS13AQ96RL7 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.86■■□□□ 1.09
VPS13AQ96RL7 RPS2P4-201ENST00000476944 856 ntBASIC21.86■■□□□ 1.09
VPS13AQ96RL7 AL121749.1-202ENST00000609313 2153 ntBASIC21.86■■□□□ 1.09
VPS13AQ96RL7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS13AQ96RL7 MKRN4P-201ENST00000444706 1521 ntBASIC21.84■■□□□ 1.09
VPS13AQ96RL7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS13AQ96RL7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS13AQ96RL7 FAM210CP-201ENST00000445714 574 ntBASIC21.83■■□□□ 1.09
VPS13AQ96RL7 AC079140.4-201ENST00000507448 529 ntBASIC21.83■■□□□ 1.09
VPS13AQ96RL7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS13AQ96RL7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS13AQ96RL7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS13AQ96RL7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS13AQ96RL7 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
VPS13AQ96RL7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.83■■□□□ 1.08
VPS13AQ96RL7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
VPS13AQ96RL7 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
VPS13AQ96RL7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
VPS13AQ96RL7 RARRES2P4-201ENST00000514074 484 ntBASIC21.83■■□□□ 1.08
VPS13AQ96RL7 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS13AQ96RL7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms