Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PTCD3Q96EY7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCD3Q96EY7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
PTCD3Q96EY7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.64■■□□□ 1.06
PTCD3Q96EY7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PTCD3Q96EY7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTCD3Q96EY7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PTCD3Q96EY7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCD3Q96EY7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 GUSBP5-201ENST00000418136 578 ntBASIC21.62■■□□□ 1.05
PTCD3Q96EY7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 MIR6724-1-201ENST00000616420 92 ntBASIC21.62■■□□□ 1.05
PTCD3Q96EY7 MIR6724-2-201ENST00000616483 92 ntBASIC21.62■■□□□ 1.05
PTCD3Q96EY7 MIR6724-4-201ENST00000617390 92 ntBASIC21.62■■□□□ 1.05
PTCD3Q96EY7 MIR6724-3-201ENST00000622482 92 ntBASIC21.62■■□□□ 1.05
PTCD3Q96EY7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTCD3Q96EY7 FAM99A-202ENST00000538190 1989 ntBASIC21.61■■□□□ 1.05
PTCD3Q96EY7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 AC144652.1-201ENST00000609974 1624 ntBASIC21.61■■□□□ 1.05
PTCD3Q96EY7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTCD3Q96EY7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 KRT16P3-201ENST00000439127 1283 ntBASIC21.6■■□□□ 1.05
PTCD3Q96EY7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTCD3Q96EY7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTCD3Q96EY7 AC087742.1-201ENST00000575880 1738 ntBASIC21.58■■□□□ 1.05
PTCD3Q96EY7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCD3Q96EY7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTCD3Q96EY7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.58■■□□□ 1.05
PTCD3Q96EY7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PTCD3Q96EY7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTCD3Q96EY7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PTCD3Q96EY7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTCD3Q96EY7 AC010542.4-201ENST00000563151 1910 ntBASIC21.58■■□□□ 1.04
PTCD3Q96EY7 AL353803.4-201ENST00000565882 1934 ntBASIC21.58■■□□□ 1.04
PTCD3Q96EY7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
PTCD3Q96EY7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTCD3Q96EY7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PTCD3Q96EY7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
PTCD3Q96EY7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCD3Q96EY7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCD3Q96EY7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
PTCD3Q96EY7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.57■■□□□ 1.04
PTCD3Q96EY7 AC005229.4-201ENST00000610085 2198 ntBASIC21.57■■□□□ 1.04
PTCD3Q96EY7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTCD3Q96EY7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PTCD3Q96EY7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms