Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 SLC6A10P-202ENST00000431994 2058 ntBASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SMC1BQ8NDV3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SMC1BQ8NDV3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.2■■□□□ 1.79
SMC1BQ8NDV3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.2■■□□□ 1.78
SMC1BQ8NDV3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC26.2■■□□□ 1.78
SMC1BQ8NDV3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
SMC1BQ8NDV3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SMC1BQ8NDV3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.2■■□□□ 1.78
SMC1BQ8NDV3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMC1BQ8NDV3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 AC010536.3-201ENST00000620306 533 ntBASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 AC068587.7-201ENST00000641602 218 ntBASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMC1BQ8NDV3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 AP001160.3-201ENST00000601484 763 ntBASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 AC083880.1-201ENST00000608266 535 ntBASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SMC1BQ8NDV3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 GXYLT1P3-201ENST00000453058 1193 ntBASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 LINC01529-204ENST00000636474 1715 ntBASIC26.17■■□□□ 1.78
SMC1BQ8NDV3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 AC211429.1-201ENST00000415277 523 ntBASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SMC1BQ8NDV3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 UBE2SP1-201ENST00000450587 669 ntBASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SMC1BQ8NDV3 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.14■■□□□ 1.78
SMC1BQ8NDV3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
SMC1BQ8NDV3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.13■■□□□ 1.77
SMC1BQ8NDV3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 MIR718-201ENST00000390190 70 ntBASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 CYP2T1P-201ENST00000432607 1285 ntBASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 AC097658.1-201ENST00000475555 843 ntBASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.12■■□□□ 1.77
SMC1BQ8NDV3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms