Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
KRT39Q6A163 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
KRT39Q6A163 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
KRT39Q6A163 PBX2P1-201ENST00000493219 1291 ntBASIC23.61■■□□□ 1.37
KRT39Q6A163 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.61■■□□□ 1.37
KRT39Q6A163 AC106739.1-201ENST00000617035 715 ntBASIC23.61■■□□□ 1.37
KRT39Q6A163 AC110285.6-201ENST00000617652 491 ntBASIC23.61■■□□□ 1.37
KRT39Q6A163 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.61■■□□□ 1.37
KRT39Q6A163 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.61■■□□□ 1.37
KRT39Q6A163 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
KRT39Q6A163 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
KRT39Q6A163 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
KRT39Q6A163 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.6■■□□□ 1.37
KRT39Q6A163 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.6■■□□□ 1.37
KRT39Q6A163 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.6■■□□□ 1.37
KRT39Q6A163 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
KRT39Q6A163 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
KRT39Q6A163 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
KRT39Q6A163 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KRT39Q6A163 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
KRT39Q6A163 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
KRT39Q6A163 BX842568.3-201ENST00000418104 571 ntBASIC23.59■■□□□ 1.37
KRT39Q6A163 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.59■■□□□ 1.37
KRT39Q6A163 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
KRT39Q6A163 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.59■■□□□ 1.37
KRT39Q6A163 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
KRT39Q6A163 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
KRT39Q6A163 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.58■■□□□ 1.37
KRT39Q6A163 AC139530.1-201ENST00000575312 1977 ntBASIC23.58■■□□□ 1.37
KRT39Q6A163 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.58■■□□□ 1.37
KRT39Q6A163 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 NALT1-201ENST00000429224 738 ntTSL 5 BASIC23.58■■□□□ 1.37
KRT39Q6A163 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.58■■□□□ 1.37
KRT39Q6A163 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
KRT39Q6A163 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.58■■□□□ 1.36
KRT39Q6A163 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
KRT39Q6A163 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
KRT39Q6A163 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
KRT39Q6A163 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
KRT39Q6A163 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
KRT39Q6A163 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
KRT39Q6A163 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.57■■□□□ 1.36
KRT39Q6A163 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.57■■□□□ 1.36
KRT39Q6A163 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
KRT39Q6A163 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
KRT39Q6A163 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
KRT39Q6A163 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
KRT39Q6A163 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.57■■□□□ 1.36
KRT39Q6A163 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
KRT39Q6A163 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
KRT39Q6A163 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
KRT39Q6A163 AP005435.1-201ENST00000529293 1178 ntBASIC23.56■■□□□ 1.36
KRT39Q6A163 AC087239.1-201ENST00000622671 572 ntBASIC23.56■■□□□ 1.36
KRT39Q6A163 EP400NL-214ENST00000641289 2402 ntBASIC23.56■■□□□ 1.36
KRT39Q6A163 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
KRT39Q6A163 LINC00526-201ENST00000581067 1875 ntBASIC23.56■■□□□ 1.36
KRT39Q6A163 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
KRT39Q6A163 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.56■■□□□ 1.36
KRT39Q6A163 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.55■■□□□ 1.36
KRT39Q6A163 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
KRT39Q6A163 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
KRT39Q6A163 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
KRT39Q6A163 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.55■■□□□ 1.36
KRT39Q6A163 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
KRT39Q6A163 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.55■■□□□ 1.36
KRT39Q6A163 AC233992.3-201ENST00000607491 485 ntBASIC23.55■■□□□ 1.36
KRT39Q6A163 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.55■■□□□ 1.36
KRT39Q6A163 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
KRT39Q6A163 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
KRT39Q6A163 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
KRT39Q6A163 AC079834.2-201ENST00000609776 1949 ntBASIC23.55■■□□□ 1.36
KRT39Q6A163 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
KRT39Q6A163 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.54■■□□□ 1.36
KRT39Q6A163 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 AC010141.3-201ENST00000456659 717 ntBASIC23.54■■□□□ 1.36
KRT39Q6A163 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.54■■□□□ 1.36
KRT39Q6A163 AL139246.5-201ENST00000606645 996 ntBASIC23.54■■□□□ 1.36
KRT39Q6A163 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
KRT39Q6A163 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
KRT39Q6A163 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms