Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
FOXA3P55318 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA3P55318 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
FOXA3P55318 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
FOXA3P55318 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
FOXA3P55318 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA3P55318 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXA3P55318 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXA3P55318 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
FOXA3P55318 AC244015.2-201ENST00000616358 1861 ntBASIC16.33■□□□□ 0.21
FOXA3P55318 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA3P55318 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
FOXA3P55318 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA3P55318 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
FOXA3P55318 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA3P55318 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXA3P55318 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
FOXA3P55318 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA3P55318 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA3P55318 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA3P55318 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
FOXA3P55318 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
FOXA3P55318 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
FOXA3P55318 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA3P55318 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC16.32■□□□□ 0.2
FOXA3P55318 AC087393.1-201ENST00000582896 145 ntBASIC16.32■□□□□ 0.2
FOXA3P55318 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
FOXA3P55318 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA3P55318 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA3P55318 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
FOXA3P55318 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 AC011551.1-201ENST00000614101 683 ntBASIC16.31■□□□□ 0.2
FOXA3P55318 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
FOXA3P55318 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA3P55318 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA3P55318 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXA3P55318 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA3P55318 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA3P55318 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA3P55318 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
FOXA3P55318 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA3P55318 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA3P55318 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA3P55318 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
FOXA3P55318 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
FOXA3P55318 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA3P55318 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXA3P55318 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXA3P55318 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXA3P55318 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
FOXA3P55318 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
FOXA3P55318 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA3P55318 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA3P55318 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA3P55318 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA3P55318 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
FOXA3P55318 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
FOXA3P55318 CEP120-209ENST00000515110 606 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXA3P55318 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.29■□□□□ 0.2
FOXA3P55318 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
FOXA3P55318 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXA3P55318 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms