Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC25.52■■□□□ 1.68
CTCFP49711 AC104187.1-201ENST00000607510 612 ntBASIC25.52■■□□□ 1.68
CTCFP49711 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC25.52■■□□□ 1.68
CTCFP49711 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CTCFP49711 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CTCFP49711 MME-217ENST00000616757 1315 ntTSL 5 BASIC25.52■■□□□ 1.68
CTCFP49711 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CTCFP49711 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.51■■□□□ 1.67
CTCFP49711 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CTCFP49711 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC25.51■■□□□ 1.67
CTCFP49711 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.67
CTCFP49711 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC25.51■■□□□ 1.67
CTCFP49711 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC25.51■■□□□ 1.67
CTCFP49711 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
CTCFP49711 PEX7-202ENST00000367756 680 ntTSL 3 BASIC25.5■■□□□ 1.67
CTCFP49711 MIR718-201ENST00000390190 70 ntBASIC25.5■■□□□ 1.67
CTCFP49711 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CTCFP49711 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
CTCFP49711 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.5■■□□□ 1.67
CTCFP49711 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC25.5■■□□□ 1.67
CTCFP49711 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CTCFP49711 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC25.5■■□□□ 1.67
CTCFP49711 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
CTCFP49711 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC25.5■■□□□ 1.67
CTCFP49711 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.5■■□□□ 1.67
CTCFP49711 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.5■■□□□ 1.67
CTCFP49711 MIR4497-201ENST00000583208 89 ntBASIC25.5■■□□□ 1.67
CTCFP49711 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CTCFP49711 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CTCFP49711 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC25.49■■□□□ 1.67
CTCFP49711 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CTCFP49711 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CTCFP49711 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.49■■□□□ 1.67
CTCFP49711 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CTCFP49711 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.49■■□□□ 1.67
CTCFP49711 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CTCFP49711 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CTCFP49711 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CTCFP49711 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CTCFP49711 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
CTCFP49711 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CTCFP49711 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC25.48■■□□□ 1.67
CTCFP49711 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
CTCFP49711 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC25.48■■□□□ 1.67
CTCFP49711 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC25.48■■□□□ 1.67
CTCFP49711 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC25.48■■□□□ 1.67
CTCFP49711 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC25.48■■□□□ 1.67
CTCFP49711 RHOD-202ENST00000532559 538 ntTSL 3 BASIC25.48■■□□□ 1.67
CTCFP49711 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC25.48■■□□□ 1.67
CTCFP49711 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC25.48■■□□□ 1.67
CTCFP49711 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
CTCFP49711 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.48■■□□□ 1.67
CTCFP49711 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CTCFP49711 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.48■■□□□ 1.67
CTCFP49711 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CTCFP49711 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.48■■□□□ 1.67
CTCFP49711 MKRN4P-201ENST00000444706 1521 ntBASIC25.47■■□□□ 1.67
CTCFP49711 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.47■■□□□ 1.67
CTCFP49711 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
CTCFP49711 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
CTCFP49711 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
CTCFP49711 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CTCFP49711 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC25.47■■□□□ 1.67
CTCFP49711 GAS7-202ENST00000396115 929 ntTSL 5 BASIC25.47■■□□□ 1.67
CTCFP49711 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CTCFP49711 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.47■■□□□ 1.67
CTCFP49711 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CTCFP49711 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
CTCFP49711 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
CTCFP49711 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC25.46■■□□□ 1.67
CTCFP49711 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
CTCFP49711 MARS-234ENST00000630571 216 ntTSL 5 BASIC25.46■■□□□ 1.67
CTCFP49711 MARS-235ENST00000630803 183 ntTSL 3 BASIC25.46■■□□□ 1.67
CTCFP49711 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
CTCFP49711 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CTCFP49711 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
CTCFP49711 UNC93B5-201ENST00000530315 699 ntBASIC25.45■■□□□ 1.66
CTCFP49711 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
CTCFP49711 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CTCFP49711 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.44■■□□□ 1.66
CTCFP49711 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 AC083880.1-201ENST00000608266 535 ntBASIC25.44■■□□□ 1.66
CTCFP49711 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
CTCFP49711 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CTCFP49711 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
CTCFP49711 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC25.44■■□□□ 1.66
CTCFP49711 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CTCFP49711 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
CTCFP49711 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
CTCFP49711 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CTCFP49711 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CTCFP49711 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.43■■□□□ 1.66
CTCFP49711 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.43■■□□□ 1.66
CTCFP49711 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms