Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PRKNO60260 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.33■□□□□ 0.85
PRKNO60260 AL031602.1-201ENST00000633169 911 ntBASIC20.33■□□□□ 0.85
PRKNO60260 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PRKNO60260 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
PRKNO60260 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PRKNO60260 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.32■□□□□ 0.84
PRKNO60260 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PRKNO60260 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.32■□□□□ 0.84
PRKNO60260 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.32■□□□□ 0.84
PRKNO60260 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.32■□□□□ 0.84
PRKNO60260 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PRKNO60260 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PRKNO60260 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 LINC01960-201ENST00000563759 1884 ntBASIC20.31■□□□□ 0.84
PRKNO60260 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.31■□□□□ 0.84
PRKNO60260 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.31■□□□□ 0.84
PRKNO60260 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.31■□□□□ 0.84
PRKNO60260 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.31■□□□□ 0.84
PRKNO60260 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKNO60260 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PRKNO60260 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
PRKNO60260 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.3■□□□□ 0.84
PRKNO60260 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.3■□□□□ 0.84
PRKNO60260 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKNO60260 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.29■□□□□ 0.84
PRKNO60260 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.29■□□□□ 0.84
PRKNO60260 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.29■□□□□ 0.84
PRKNO60260 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.29■□□□□ 0.84
PRKNO60260 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.29■□□□□ 0.84
PRKNO60260 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.29■□□□□ 0.84
PRKNO60260 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.29■□□□□ 0.84
PRKNO60260 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKNO60260 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.28■□□□□ 0.84
PRKNO60260 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PRKNO60260 AC087742.1-201ENST00000575880 1738 ntBASIC20.28■□□□□ 0.84
PRKNO60260 MIR572-201ENST00000384983 95 ntBASIC20.28■□□□□ 0.84
PRKNO60260 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.28■□□□□ 0.84
PRKNO60260 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PRKNO60260 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PRKNO60260 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PRKNO60260 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PRKNO60260 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PRKNO60260 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PRKNO60260 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PRKNO60260 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PRKNO60260 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PRKNO60260 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PRKNO60260 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.27■□□□□ 0.84
PRKNO60260 AC026271.2-201ENST00000428091 497 ntBASIC20.27■□□□□ 0.84
PRKNO60260 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PRKNO60260 RARRES2P6-201ENST00000567333 442 ntBASIC20.27■□□□□ 0.84
PRKNO60260 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.27■□□□□ 0.84
PRKNO60260 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.27■□□□□ 0.84
PRKNO60260 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
PRKNO60260 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
PRKNO60260 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.26■□□□□ 0.83
PRKNO60260 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.26■□□□□ 0.83
PRKNO60260 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PRKNO60260 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKNO60260 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
PRKNO60260 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKNO60260 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.26■□□□□ 0.83
PRKNO60260 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PRKNO60260 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKNO60260 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PRKNO60260 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKNO60260 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKNO60260 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PRKNO60260 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.25■□□□□ 0.83
PRKNO60260 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms