Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
AP4S1Q9Y587 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP4S1Q9Y587 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4S1Q9Y587 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4S1Q9Y587 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.68■□□□□ 0.9
AP4S1Q9Y587 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
AP4S1Q9Y587 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.66■□□□□ 0.9
AP4S1Q9Y587 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.65■□□□□ 0.9
AP4S1Q9Y587 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
AP4S1Q9Y587 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
AP4S1Q9Y587 AC092667.1-201ENST00000434301 2586 ntBASIC20.64■□□□□ 0.9
AP4S1Q9Y587 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
AP4S1Q9Y587 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4S1Q9Y587 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
AP4S1Q9Y587 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.62■□□□□ 0.89
AP4S1Q9Y587 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 AC144652.1-201ENST00000609974 1624 ntBASIC20.61■□□□□ 0.89
AP4S1Q9Y587 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 LONRF2P2-201ENST00000439212 571 ntBASIC20.61■□□□□ 0.89
AP4S1Q9Y587 SPCS2P3-201ENST00000500401 656 ntBASIC20.61■□□□□ 0.89
AP4S1Q9Y587 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
AP4S1Q9Y587 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4S1Q9Y587 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms