Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC004812.2-201ENST00000611079 2094 ntBASIC25.13■■□□□ 1.61
DDX41Q9UJV9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
DDX41Q9UJV9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX41Q9UJV9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX41Q9UJV9 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 MIR572-201ENST00000384983 95 ntBASIC25.09■■□□□ 1.61
DDX41Q9UJV9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.09■■□□□ 1.61
DDX41Q9UJV9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
DDX41Q9UJV9 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.08■■□□□ 1.6
DDX41Q9UJV9 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
DDX41Q9UJV9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.08■■□□□ 1.6
DDX41Q9UJV9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
DDX41Q9UJV9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 AL358852.1-201ENST00000623174 1268 ntBASIC25.07■■□□□ 1.6
DDX41Q9UJV9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.07■■□□□ 1.6
DDX41Q9UJV9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 EP400NL-214ENST00000641289 2402 ntBASIC25.06■■□□□ 1.6
DDX41Q9UJV9 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms