Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
DDX28Q9NUL7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
DDX28Q9NUL7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 AC073130.3-201ENST00000624389 2278 ntBASIC19.85■□□□□ 0.77
DDX28Q9NUL7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 AC137630.3-201ENST00000607245 391 ntBASIC19.85■□□□□ 0.77
DDX28Q9NUL7 AL031848.2-201ENST00000607670 837 ntBASIC19.85■□□□□ 0.77
DDX28Q9NUL7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DDX28Q9NUL7 ECEL1P1-201ENST00000373592 1742 ntBASIC19.85■□□□□ 0.77
DDX28Q9NUL7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DDX28Q9NUL7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.83■□□□□ 0.77
DDX28Q9NUL7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
DDX28Q9NUL7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DDX28Q9NUL7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.81■□□□□ 0.76
DDX28Q9NUL7 SNX5-217ENST00000606557 1087 ntBASIC19.81■□□□□ 0.76
DDX28Q9NUL7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms