Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
EXOSC4Q9NPD3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 RPS2P7-201ENST00000447334 885 ntBASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 SPCS2P3-201ENST00000500401 656 ntBASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 MIR6765-201ENST00000614092 87 ntBASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 AC073130.3-201ENST00000624389 2278 ntBASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
EXOSC4Q9NPD3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 U85056.1-201ENST00000616429 682 ntBASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 FAM99A-202ENST00000538190 1989 ntBASIC19.74■□□□□ 0.75
EXOSC4Q9NPD3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 AC138932.1-201ENST00000534164 6830 ntBASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.73■□□□□ 0.75
EXOSC4Q9NPD3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 DUX4L9-201ENST00000449051 1259 ntBASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC4Q9NPD3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.71■□□□□ 0.75
EXOSC4Q9NPD3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 AC005229.4-201ENST00000610085 2198 ntBASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.7■□□□□ 0.74
EXOSC4Q9NPD3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms