Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SHROOM3Q8TF72 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
SHROOM3Q8TF72 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
SHROOM3Q8TF72 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 AC136469.2-201ENST00000623944 1028 ntBASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.4■■□□□ 1.18
SHROOM3Q8TF72 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 OR2I1P-207ENST00000453522 948 ntBASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 AL117328.2-201ENST00000624617 1940 ntBASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 AC080038.3-201ENST00000623346 1952 ntBASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
SHROOM3Q8TF72 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 AC087239.1-201ENST00000622671 572 ntBASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
SHROOM3Q8TF72 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 AC092171.4-201ENST00000609130 632 ntBASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
SHROOM3Q8TF72 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 ESRRAP2-201ENST00000418437 1549 ntBASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
SHROOM3Q8TF72 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 AL031602.1-201ENST00000633169 911 ntBASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SHROOM3Q8TF72 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 MIR4767-201ENST00000582827 78 ntBASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SHROOM3Q8TF72 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms