Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 AC007375.3-201ENST00000600936 2314 ntBASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.98■□□□□ 0.95
CLHC1Q8NHS4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLHC1Q8NHS4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.96■□□□□ 0.95
CLHC1Q8NHS4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CLHC1Q8NHS4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 FBXW4P1-201ENST00000426721 2239 ntBASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 AC137767.1-201ENST00000602918 1920 ntBASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLHC1Q8NHS4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLHC1Q8NHS4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 MIR6724-1-201ENST00000616420 92 ntBASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 MIR6724-2-201ENST00000616483 92 ntBASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 MIR6724-4-201ENST00000617390 92 ntBASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 MIR6724-3-201ENST00000622482 92 ntBASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLHC1Q8NHS4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CLHC1Q8NHS4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
CLHC1Q8NHS4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms