Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
SH3RF1Q7Z6J0 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.2■■□□□ 1.63
SH3RF1Q7Z6J0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SH3RF1Q7Z6J0 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
SH3RF1Q7Z6J0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 MIR6084-201ENST00000622012 110 ntBASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
SH3RF1Q7Z6J0 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SH3RF1Q7Z6J0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 AC079834.2-201ENST00000609776 1949 ntBASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 AC027612.3-201ENST00000413684 1047 ntBASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
SH3RF1Q7Z6J0 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 GXYLT1P2-201ENST00000433312 1230 ntBASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 AC123595.1-201ENST00000440769 1046 ntBASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 AC233723.2-201ENST00000623798 2106 ntBASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
SH3RF1Q7Z6J0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SH3RF1Q7Z6J0 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SH3RF1Q7Z6J0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.62
SH3RF1Q7Z6J0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.14■■□□□ 1.62
SH3RF1Q7Z6J0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
SH3RF1Q7Z6J0 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SH3RF1Q7Z6J0 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 HLA-L-209ENST00000420110 1011 ntBASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 CCDC92B-201ENST00000575506 885 ntBASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.13■■□□□ 1.61
SH3RF1Q7Z6J0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 AL353803.4-201ENST00000565882 1934 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 AL117328.2-201ENST00000624617 1940 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 pRNA.6-201ENST00000610482 90 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 pRNA.5-201ENST00000612139 90 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 pRNA.11-201ENST00000618423 90 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 pRNA.13-201ENST00000619112 90 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 AL358852.1-201ENST00000623174 1268 ntBASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.12■■□□□ 1.61
SH3RF1Q7Z6J0 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms