Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 pRNA.6-201ENST00000610482 90 ntBASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 pRNA.5-201ENST00000612139 90 ntBASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 pRNA.11-201ENST00000618423 90 ntBASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 pRNA.13-201ENST00000619112 90 ntBASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 AC127496.7-201ENST00000625110 1798 ntBASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.65■□□□□ 0.74
NHLRC1Q6VVB1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NHLRC1Q6VVB1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
NHLRC1Q6VVB1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NHLRC1Q6VVB1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 AC133637.1-201ENST00000624115 1537 ntBASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NHLRC1Q6VVB1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NHLRC1Q6VVB1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.61■□□□□ 0.73
NHLRC1Q6VVB1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 SERBP1P1-201ENST00000396021 1160 ntBASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 AC092171.4-201ENST00000609130 632 ntBASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 AC131212.1-201ENST00000613771 668 ntBASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NHLRC1Q6VVB1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 AL138724.1-201ENST00000606771 1088 ntBASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NHLRC1Q6VVB1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
NHLRC1Q6VVB1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
NHLRC1Q6VVB1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NHLRC1Q6VVB1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NHLRC1Q6VVB1 GUSBP5-202ENST00000510805 1989 ntBASIC19.58■□□□□ 0.73
NHLRC1Q6VVB1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 AL136116.3-201ENST00000402907 1138 ntBASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
NHLRC1Q6VVB1 CA15P2-201ENST00000611168 834 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms