Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX4Q33E94 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX4Q33E94 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
RFX4Q33E94 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RFX4Q33E94 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RFX4Q33E94 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.31■□□□□ 0.84
RFX4Q33E94 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
RFX4Q33E94 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RFX4Q33E94 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.31■□□□□ 0.84
RFX4Q33E94 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RFX4Q33E94 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.31■□□□□ 0.84
RFX4Q33E94 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.31■□□□□ 0.84
RFX4Q33E94 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RFX4Q33E94 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RFX4Q33E94 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
RFX4Q33E94 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX4Q33E94 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX4Q33E94 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX4Q33E94 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX4Q33E94 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX4Q33E94 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX4Q33E94 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RFX4Q33E94 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
RFX4Q33E94 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.29■□□□□ 0.84
RFX4Q33E94 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.29■□□□□ 0.84
RFX4Q33E94 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.29■□□□□ 0.84
RFX4Q33E94 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.29■□□□□ 0.84
RFX4Q33E94 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.29■□□□□ 0.84
RFX4Q33E94 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.29■□□□□ 0.84
RFX4Q33E94 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX4Q33E94 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.29■□□□□ 0.84
RFX4Q33E94 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
RFX4Q33E94 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
RFX4Q33E94 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RFX4Q33E94 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RFX4Q33E94 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX4Q33E94 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX4Q33E94 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX4Q33E94 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.28■□□□□ 0.84
RFX4Q33E94 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX4Q33E94 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX4Q33E94 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 MIR4508-201ENST00000584178 70 ntBASIC20.27■□□□□ 0.84
RFX4Q33E94 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX4Q33E94 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.27■□□□□ 0.84
RFX4Q33E94 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX4Q33E94 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.83
RFX4Q33E94 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RFX4Q33E94 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
RFX4Q33E94 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
RFX4Q33E94 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RFX4Q33E94 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.26■□□□□ 0.83
RFX4Q33E94 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RFX4Q33E94 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX4Q33E94 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.26■□□□□ 0.83
RFX4Q33E94 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RFX4Q33E94 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RFX4Q33E94 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX4Q33E94 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 AC244015.2-201ENST00000616358 1861 ntBASIC20.25■□□□□ 0.83
RFX4Q33E94 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RFX4Q33E94 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.25■□□□□ 0.83
RFX4Q33E94 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RFX4Q33E94 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
RFX4Q33E94 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms