Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.3■■□□□ 1
COL5A1P20908 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.3■■□□□ 1
COL5A1P20908 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
COL5A1P20908 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A1P20908 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.29■■□□□ 1
COL5A1P20908 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A1P20908 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.29■■□□□ 1
COL5A1P20908 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL5A1P20908 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
COL5A1P20908 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A1P20908 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A1P20908 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL5A1P20908 AC079630.1-202ENST00000618127 1840 ntBASIC21.29■■□□□ 1
COL5A1P20908 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL5A1P20908 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.28■■□□□ 1
COL5A1P20908 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL5A1P20908 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.28■■□□□ 1
COL5A1P20908 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL5A1P20908 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL5A1P20908 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL5A1P20908 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
COL5A1P20908 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.27■■□□□ 1
COL5A1P20908 AC004687.1-201ENST00000579003 1625 ntBASIC21.27■■□□□ 1
COL5A1P20908 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A1P20908 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.27■□□□□ 0.99
COL5A1P20908 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A1P20908 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.27■□□□□ 0.99
COL5A1P20908 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.27■□□□□ 0.99
COL5A1P20908 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.27■□□□□ 0.99
COL5A1P20908 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A1P20908 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A1P20908 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL5A1P20908 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.27■□□□□ 0.99
COL5A1P20908 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A1P20908 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.26■□□□□ 0.99
COL5A1P20908 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A1P20908 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
COL5A1P20908 MFSD11-216ENST00000590393 1141 ntBASIC21.26■□□□□ 0.99
COL5A1P20908 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.26■□□□□ 0.99
COL5A1P20908 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL5A1P20908 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.26■□□□□ 0.99
COL5A1P20908 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.26■□□□□ 0.99
COL5A1P20908 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
COL5A1P20908 AC010141.3-201ENST00000456659 717 ntBASIC21.25■□□□□ 0.99
COL5A1P20908 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.25■□□□□ 0.99
COL5A1P20908 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL5A1P20908 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL5A1P20908 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL5A1P20908 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL5A1P20908 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.25■□□□□ 0.99
COL5A1P20908 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.25■□□□□ 0.99
COL5A1P20908 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.25■□□□□ 0.99
COL5A1P20908 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
COL5A1P20908 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
COL5A1P20908 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A1P20908 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A1P20908 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
COL5A1P20908 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
COL5A1P20908 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.24■□□□□ 0.99
COL5A1P20908 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.24■□□□□ 0.99
COL5A1P20908 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
COL5A1P20908 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A1P20908 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A1P20908 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A1P20908 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.23■□□□□ 0.99
COL5A1P20908 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.23■□□□□ 0.99
COL5A1P20908 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.23■□□□□ 0.99
COL5A1P20908 AC135731.1-201ENST00000569415 2548 ntBASIC21.23■□□□□ 0.99
COL5A1P20908 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL5A1P20908 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
COL5A1P20908 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A1P20908 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.22■□□□□ 0.99
COL5A1P20908 AC142086.2-201ENST00000569753 217 ntBASIC21.22■□□□□ 0.99
COL5A1P20908 AC011767.1-201ENST00000617410 1153 ntBASIC21.22■□□□□ 0.99
COL5A1P20908 AL050303.2-201ENST00000619798 666 ntBASIC21.22■□□□□ 0.99
COL5A1P20908 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.22■□□□□ 0.99
COL5A1P20908 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.22■□□□□ 0.99
COL5A1P20908 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A1P20908 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.22■□□□□ 0.99
COL5A1P20908 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.22■□□□□ 0.99
COL5A1P20908 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
COL5A1P20908 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
COL5A1P20908 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.22■□□□□ 0.99
COL5A1P20908 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.22■□□□□ 0.99
COL5A1P20908 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.22■□□□□ 0.99
COL5A1P20908 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A1P20908 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.22■□□□□ 0.99
COL5A1P20908 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
COL5A1P20908 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A1P20908 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL5A1P20908 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
COL5A1P20908 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A1P20908 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms