Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC145350.3-201ENST00000569033 163 ntBASIC21.51■■□□□ 1.03
SDC3O75056 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SDC3O75056 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SDC3O75056 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SDC3O75056 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SDC3O75056 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SDC3O75056 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.51■■□□□ 1.03
SDC3O75056 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDC3O75056 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SDC3O75056 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDC3O75056 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SDC3O75056 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SDC3O75056 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SDC3O75056 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SDC3O75056 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.5■■□□□ 1.03
SDC3O75056 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.5■■□□□ 1.03
SDC3O75056 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.5■■□□□ 1.03
SDC3O75056 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.5■■□□□ 1.03
SDC3O75056 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.5■■□□□ 1.03
SDC3O75056 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDC3O75056 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SDC3O75056 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SDC3O75056 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.49■■□□□ 1.03
SDC3O75056 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.49■■□□□ 1.03
SDC3O75056 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDC3O75056 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDC3O75056 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SDC3O75056 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.49■■□□□ 1.03
SDC3O75056 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
SDC3O75056 BX005040.4-201ENST00000637145 1518 ntBASIC21.49■■□□□ 1.03
SDC3O75056 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDC3O75056 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.48■■□□□ 1.03
SDC3O75056 AC004854.2-201ENST00000608450 1441 ntBASIC21.48■■□□□ 1.03
SDC3O75056 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDC3O75056 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDC3O75056 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SDC3O75056 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.48■■□□□ 1.03
SDC3O75056 AC080038.1-201ENST00000611274 1154 ntBASIC21.48■■□□□ 1.03
SDC3O75056 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.48■■□□□ 1.03
SDC3O75056 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SDC3O75056 AC087239.1-201ENST00000622671 572 ntBASIC21.48■■□□□ 1.03
SDC3O75056 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SDC3O75056 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.48■■□□□ 1.03
SDC3O75056 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.47■■□□□ 1.03
SDC3O75056 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SDC3O75056 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SDC3O75056 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SDC3O75056 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
SDC3O75056 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.47■■□□□ 1.03
SDC3O75056 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.47■■□□□ 1.03
SDC3O75056 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.47■■□□□ 1.03
SDC3O75056 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.47■■□□□ 1.03
SDC3O75056 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SDC3O75056 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SDC3O75056 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.47■■□□□ 1.03
SDC3O75056 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
SDC3O75056 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.46■■□□□ 1.03
SDC3O75056 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
SDC3O75056 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.46■■□□□ 1.03
SDC3O75056 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.46■■□□□ 1.03
SDC3O75056 AC006015.1-201ENST00000429970 570 ntBASIC21.46■■□□□ 1.03
SDC3O75056 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 AC010141.3-201ENST00000456659 717 ntBASIC21.46■■□□□ 1.03
SDC3O75056 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.46■■□□□ 1.03
SDC3O75056 SMUG1P1-201ENST00000590640 811 ntBASIC21.46■■□□□ 1.03
SDC3O75056 AC068587.7-201ENST00000641602 218 ntBASIC21.46■■□□□ 1.03
SDC3O75056 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SDC3O75056 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
SDC3O75056 AP004607.4-201ENST00000530158 1459 ntBASIC21.45■■□□□ 1.03
SDC3O75056 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.45■■□□□ 1.02
SDC3O75056 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SDC3O75056 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SDC3O75056 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.45■■□□□ 1.02
SDC3O75056 HLA-L-209ENST00000420110 1011 ntBASIC21.45■■□□□ 1.02
SDC3O75056 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SDC3O75056 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.45■■□□□ 1.02
SDC3O75056 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SDC3O75056 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SDC3O75056 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.44■■□□□ 1.02
SDC3O75056 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.44■■□□□ 1.02
SDC3O75056 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SDC3O75056 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SDC3O75056 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SDC3O75056 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SDC3O75056 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SDC3O75056 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.44■■□□□ 1.02
SDC3O75056 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.43■■□□□ 1.02
SDC3O75056 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SDC3O75056 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms