Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.24■□□□□ 0.67
LMX1BO60663 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.24■□□□□ 0.67
LMX1BO60663 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1BO60663 AC087742.1-201ENST00000575880 1738 ntBASIC19.24■□□□□ 0.67
LMX1BO60663 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LMX1BO60663 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LMX1BO60663 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LMX1BO60663 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LMX1BO60663 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1BO60663 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
LMX1BO60663 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LMX1BO60663 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.23■□□□□ 0.67
LMX1BO60663 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 AL136162.1-201ENST00000607711 1078 ntBASIC19.23■□□□□ 0.67
LMX1BO60663 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.23■□□□□ 0.67
LMX1BO60663 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
LMX1BO60663 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
LMX1BO60663 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LMX1BO60663 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
LMX1BO60663 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1BO60663 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1BO60663 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.22■□□□□ 0.67
LMX1BO60663 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
LMX1BO60663 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.22■□□□□ 0.67
LMX1BO60663 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1BO60663 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.22■□□□□ 0.67
LMX1BO60663 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1BO60663 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LMX1BO60663 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.22■□□□□ 0.67
LMX1BO60663 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.22■□□□□ 0.67
LMX1BO60663 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1BO60663 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LMX1BO60663 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LMX1BO60663 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LMX1BO60663 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1BO60663 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1BO60663 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.22■□□□□ 0.67
LMX1BO60663 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1BO60663 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.21■□□□□ 0.67
LMX1BO60663 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.21■□□□□ 0.67
LMX1BO60663 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LMX1BO60663 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1BO60663 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1BO60663 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.66
LMX1BO60663 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1BO60663 AC007375.3-201ENST00000600936 2314 ntBASIC19.2■□□□□ 0.66
LMX1BO60663 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1BO60663 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1BO60663 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LMX1BO60663 SRD5A1P1-201ENST00000442297 786 ntBASIC19.2■□□□□ 0.66
LMX1BO60663 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.2■□□□□ 0.66
LMX1BO60663 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.2■□□□□ 0.66
LMX1BO60663 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.2■□□□□ 0.66
LMX1BO60663 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1BO60663 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1BO60663 AC135279.3-201ENST00000610945 1311 ntBASIC19.2■□□□□ 0.66
LMX1BO60663 AC005703.6-201ENST00000623265 1329 ntBASIC19.2■□□□□ 0.66
LMX1BO60663 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.19■□□□□ 0.66
LMX1BO60663 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.19■□□□□ 0.66
LMX1BO60663 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.19■□□□□ 0.66
LMX1BO60663 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LMX1BO60663 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LMX1BO60663 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
LMX1BO60663 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 SUDS3P1-201ENST00000505831 966 ntBASIC19.18■□□□□ 0.66
LMX1BO60663 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.18■□□□□ 0.66
LMX1BO60663 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.18■□□□□ 0.66
LMX1BO60663 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LMX1BO60663 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LMX1BO60663 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LMX1BO60663 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms