Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RBFOX3A6NFN3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RBFOX3A6NFN3 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.29■□□□□ 0.36
RBFOX3A6NFN3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RBFOX3A6NFN3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 AC090877.2-201ENST00000558441 1738 ntBASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RBFOX3A6NFN3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RBFOX3A6NFN3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RBFOX3A6NFN3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RBFOX3A6NFN3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
RBFOX3A6NFN3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.27■□□□□ 0.35
RBFOX3A6NFN3 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RBFOX3A6NFN3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RBFOX3A6NFN3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 AL353803.4-201ENST00000565882 1934 ntBASIC17.25■□□□□ 0.35
RBFOX3A6NFN3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RBFOX3A6NFN3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 LINC01006-201ENST00000333319 2292 ntBASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms