Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 AC144652.1-201ENST00000609974 1624 ntBASIC17.14■□□□□ 0.33
TRAV1-1A0A0B4J248 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV1-1A0A0B4J248 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 AF106564.1-201ENST00000607058 2553 ntBASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 CR559946.2-201ENST00000623684 991 ntBASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 LINC01006-201ENST00000333319 2292 ntBASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV1-1A0A0B4J248 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV1-1A0A0B4J248 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 AC007029.1-201ENST00000604183 313 ntBASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV1-1A0A0B4J248 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 RPS2P7-201ENST00000447334 885 ntBASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TRAV1-1A0A0B4J248 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms