Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
MKS1Q9NXB0 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 MIR6722-201ENST00000617286 78 ntBASIC21.76■■□□□ 1.07
MKS1Q9NXB0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.76■■□□□ 1.07
MKS1Q9NXB0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MKS1Q9NXB0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
MKS1Q9NXB0 AC137630.3-201ENST00000607245 391 ntBASIC21.75■■□□□ 1.07
MKS1Q9NXB0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.75■■□□□ 1.07
MKS1Q9NXB0 AC244015.2-201ENST00000616358 1861 ntBASIC21.75■■□□□ 1.07
MKS1Q9NXB0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MKS1Q9NXB0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.74■■□□□ 1.07
MKS1Q9NXB0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MKS1Q9NXB0 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
MKS1Q9NXB0 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 TSPY13P-201ENST00000338964 914 ntBASIC21.72■■□□□ 1.07
MKS1Q9NXB0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MKS1Q9NXB0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
MKS1Q9NXB0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MKS1Q9NXB0 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 AC103834.1-201ENST00000520383 144 ntBASIC21.69■■□□□ 1.06
MKS1Q9NXB0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.69■■□□□ 1.06
MKS1Q9NXB0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms