Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 SMUG1P1-201ENST00000590640 811 ntBASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.67■■□□□ 1.54
UPF3AQ9H1J1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 AC004687.1-201ENST00000579003 1625 ntBASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 BID-214ENST00000617586 542 ntTSL 5 BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.66■■□□□ 1.54
UPF3AQ9H1J1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 KRT19P1-201ENST00000405746 1186 ntBASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
UPF3AQ9H1J1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 AC010141.3-201ENST00000456659 717 ntBASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC24.64■■□□□ 1.54
UPF3AQ9H1J1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
UPF3AQ9H1J1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.64■■□□□ 1.53
UPF3AQ9H1J1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC24.64■■□□□ 1.53
UPF3AQ9H1J1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 AC104771.1-201ENST00000603335 964 ntBASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 AC079630.1-202ENST00000618127 1840 ntBASIC24.63■■□□□ 1.53
UPF3AQ9H1J1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
UPF3AQ9H1J1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 CROCCP5-201ENST00000436658 830 ntBASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 AC087239.1-201ENST00000622671 572 ntBASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
UPF3AQ9H1J1 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
UPF3AQ9H1J1 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
UPF3AQ9H1J1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
UPF3AQ9H1J1 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC24.59■■□□□ 1.53
UPF3AQ9H1J1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.59■■□□□ 1.53
UPF3AQ9H1J1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
UPF3AQ9H1J1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms