Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX3-1Q99801 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NKX3-1Q99801 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
NKX3-1Q99801 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NKX3-1Q99801 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX3-1Q99801 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NKX3-1Q99801 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX3-1Q99801 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.09■□□□□ 0.65
NKX3-1Q99801 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.09■□□□□ 0.65
NKX3-1Q99801 AC103724.3-201ENST00000564481 992 ntBASIC19.09■□□□□ 0.65
NKX3-1Q99801 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
NKX3-1Q99801 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
NKX3-1Q99801 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.09■□□□□ 0.65
NKX3-1Q99801 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NKX3-1Q99801 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
NKX3-1Q99801 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NKX3-1Q99801 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX3-1Q99801 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.08■□□□□ 0.65
NKX3-1Q99801 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NKX3-1Q99801 AC144652.1-201ENST00000609974 1624 ntBASIC19.08■□□□□ 0.65
NKX3-1Q99801 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.08■□□□□ 0.65
NKX3-1Q99801 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
NKX3-1Q99801 MIR4508-201ENST00000584178 70 ntBASIC19.08■□□□□ 0.64
NKX3-1Q99801 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
NKX3-1Q99801 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
NKX3-1Q99801 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NKX3-1Q99801 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NKX3-1Q99801 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 AL035685.1-201ENST00000636663 812 ntBASIC19.07■□□□□ 0.64
NKX3-1Q99801 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
NKX3-1Q99801 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
NKX3-1Q99801 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX3-1Q99801 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
NKX3-1Q99801 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX3-1Q99801 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX3-1Q99801 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX3-1Q99801 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.06■□□□□ 0.64
NKX3-1Q99801 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX3-1Q99801 AL031848.2-201ENST00000607670 837 ntBASIC19.06■□□□□ 0.64
NKX3-1Q99801 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.06■□□□□ 0.64
NKX3-1Q99801 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX3-1Q99801 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
NKX3-1Q99801 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.06■□□□□ 0.64
NKX3-1Q99801 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
NKX3-1Q99801 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.05■□□□□ 0.64
NKX3-1Q99801 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
NKX3-1Q99801 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.04■□□□□ 0.64
NKX3-1Q99801 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.04■□□□□ 0.64
NKX3-1Q99801 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX3-1Q99801 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.04■□□□□ 0.64
NKX3-1Q99801 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.04■□□□□ 0.64
NKX3-1Q99801 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.04■□□□□ 0.64
NKX3-1Q99801 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
NKX3-1Q99801 PKD1P6-201ENST00000343738 4769 ntBASIC19.04■□□□□ 0.64
NKX3-1Q99801 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NKX3-1Q99801 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms