Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VMP1Q96GC9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VMP1Q96GC9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VMP1Q96GC9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.91■□□□□ 0.94
VMP1Q96GC9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VMP1Q96GC9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.9■□□□□ 0.94
VMP1Q96GC9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.9■□□□□ 0.94
VMP1Q96GC9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.9■□□□□ 0.94
VMP1Q96GC9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 UNC93B3-201ENST00000308076 687 ntBASIC20.9■□□□□ 0.94
VMP1Q96GC9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.9■□□□□ 0.94
VMP1Q96GC9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VMP1Q96GC9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
VMP1Q96GC9 LINC00526-201ENST00000581067 1875 ntBASIC20.9■□□□□ 0.94
VMP1Q96GC9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.9■□□□□ 0.94
VMP1Q96GC9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VMP1Q96GC9 SYT6-210ENST00000641643 1587 ntBASIC20.89■□□□□ 0.94
VMP1Q96GC9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VMP1Q96GC9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.89■□□□□ 0.93
VMP1Q96GC9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VMP1Q96GC9 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VMP1Q96GC9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.89■□□□□ 0.93
VMP1Q96GC9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VMP1Q96GC9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VMP1Q96GC9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VMP1Q96GC9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.89■□□□□ 0.93
VMP1Q96GC9 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.89■□□□□ 0.93
VMP1Q96GC9 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
VMP1Q96GC9 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.89■□□□□ 0.93
VMP1Q96GC9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VMP1Q96GC9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
VMP1Q96GC9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VMP1Q96GC9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VMP1Q96GC9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VMP1Q96GC9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VMP1Q96GC9 AC009086.3-201ENST00000623486 1008 ntBASIC20.88■□□□□ 0.93
VMP1Q96GC9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VMP1Q96GC9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
VMP1Q96GC9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 AL136162.1-201ENST00000607711 1078 ntBASIC20.87■□□□□ 0.93
VMP1Q96GC9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
VMP1Q96GC9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VMP1Q96GC9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VMP1Q96GC9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.87■□□□□ 0.93
VMP1Q96GC9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VMP1Q96GC9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.86■□□□□ 0.93
VMP1Q96GC9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VMP1Q96GC9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 AC135279.3-201ENST00000610945 1311 ntBASIC20.85■□□□□ 0.93
VMP1Q96GC9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 PBX2P1-201ENST00000493219 1291 ntBASIC20.85■□□□□ 0.93
VMP1Q96GC9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 AC106739.1-201ENST00000617035 715 ntBASIC20.85■□□□□ 0.93
VMP1Q96GC9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VMP1Q96GC9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.85■□□□□ 0.93
VMP1Q96GC9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 1001.2 ms