Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLIP3Q96DZ5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 AC097381.1-201ENST00000429019 1296 ntBASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 IGHV3-19-201ENST00000521488 291 ntBASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 AC010525.1-201ENST00000585559 441 ntBASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLIP3Q96DZ5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 OR2I1P-207ENST00000453522 948 ntBASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 AC079630.1-202ENST00000618127 1840 ntBASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLIP3Q96DZ5 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.04■□□□□ 0.96
CLIP3Q96DZ5 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLIP3Q96DZ5 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 AC087623.3-201ENST00000607047 1098 ntBASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 AC092666.2-201ENST00000613287 246 ntBASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLIP3Q96DZ5 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLIP3Q96DZ5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms