Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 PBX2P1-201ENST00000493219 1291 ntBASIC26.53■■□□□ 1.84
VPS53Q5VIR6 AL139246.5-201ENST00000606645 996 ntBASIC26.53■■□□□ 1.84
VPS53Q5VIR6 AC135279.3-201ENST00000610945 1311 ntBASIC26.53■■□□□ 1.84
VPS53Q5VIR6 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 AC079834.2-201ENST00000609776 1949 ntBASIC26.53■■□□□ 1.84
VPS53Q5VIR6 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
VPS53Q5VIR6 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
VPS53Q5VIR6 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
VPS53Q5VIR6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
VPS53Q5VIR6 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.52■■□□□ 1.84
VPS53Q5VIR6 AL117328.2-201ENST00000624617 1940 ntBASIC26.51■■□□□ 1.83
VPS53Q5VIR6 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 MIR4767-201ENST00000582827 78 ntBASIC26.51■■□□□ 1.83
VPS53Q5VIR6 AL138724.1-201ENST00000606771 1088 ntBASIC26.51■■□□□ 1.83
VPS53Q5VIR6 AC011298.3-201ENST00000615796 283 ntBASIC26.51■■□□□ 1.83
VPS53Q5VIR6 AC106739.1-201ENST00000617035 715 ntBASIC26.51■■□□□ 1.83
VPS53Q5VIR6 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
VPS53Q5VIR6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
VPS53Q5VIR6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC26.5■■□□□ 1.83
VPS53Q5VIR6 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
VPS53Q5VIR6 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC26.5■■□□□ 1.83
VPS53Q5VIR6 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
VPS53Q5VIR6 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
VPS53Q5VIR6 AC136469.2-201ENST00000623944 1028 ntBASIC26.5■■□□□ 1.83
VPS53Q5VIR6 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
VPS53Q5VIR6 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 AL031432.3-201ENST00000607698 485 ntBASIC26.48■■□□□ 1.83
VPS53Q5VIR6 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
VPS53Q5VIR6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VPS53Q5VIR6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 AC010525.1-201ENST00000585559 441 ntBASIC26.46■■□□□ 1.83
VPS53Q5VIR6 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
VPS53Q5VIR6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
VPS53Q5VIR6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
VPS53Q5VIR6 MIR638-201ENST00000385237 100 ntBASIC26.44■■□□□ 1.82
VPS53Q5VIR6 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS53Q5VIR6 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
VPS53Q5VIR6 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC26.43■■□□□ 1.82
VPS53Q5VIR6 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC26.43■■□□□ 1.82
VPS53Q5VIR6 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC26.43■■□□□ 1.82
VPS53Q5VIR6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms