Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SRP54P61011 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.68■■□□□ 1.06
SRP54P61011 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SRP54P61011 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.67■■□□□ 1.06
SRP54P61011 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SRP54P61011 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.67■■□□□ 1.06
SRP54P61011 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SRP54P61011 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.66■■□□□ 1.06
SRP54P61011 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 AC123595.1-201ENST00000440769 1046 ntBASIC21.66■■□□□ 1.06
SRP54P61011 AC034268.1-201ENST00000441047 882 ntBASIC21.66■■□□□ 1.06
SRP54P61011 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.66■■□□□ 1.06
SRP54P61011 AL031602.1-201ENST00000633169 911 ntBASIC21.66■■□□□ 1.06
SRP54P61011 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.66■■□□□ 1.06
SRP54P61011 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.66■■□□□ 1.06
SRP54P61011 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
SRP54P61011 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SRP54P61011 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SRP54P61011 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SRP54P61011 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SRP54P61011 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
SRP54P61011 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.65■■□□□ 1.06
SRP54P61011 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.65■■□□□ 1.06
SRP54P61011 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.65■■□□□ 1.06
SRP54P61011 AC068587.7-201ENST00000641602 218 ntBASIC21.65■■□□□ 1.06
SRP54P61011 AC105233.4-201ENST00000642045 216 ntBASIC21.65■■□□□ 1.06
SRP54P61011 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.65■■□□□ 1.06
SRP54P61011 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.64■■□□□ 1.06
SRP54P61011 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.64■■□□□ 1.06
SRP54P61011 ANOS2P-203ENST00000472227 1816 ntBASIC21.64■■□□□ 1.06
SRP54P61011 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SRP54P61011 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.06
SRP54P61011 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.64■■□□□ 1.06
SRP54P61011 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.64■■□□□ 1.06
SRP54P61011 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SRP54P61011 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.64■■□□□ 1.05
SRP54P61011 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
SRP54P61011 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SRP54P61011 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SRP54P61011 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.64■■□□□ 1.05
SRP54P61011 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.64■■□□□ 1.05
SRP54P61011 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.64■■□□□ 1.05
SRP54P61011 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.64■■□□□ 1.05
SRP54P61011 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.64■■□□□ 1.05
SRP54P61011 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.64■■□□□ 1.05
SRP54P61011 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.64■■□□□ 1.05
SRP54P61011 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.63■■□□□ 1.05
SRP54P61011 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.63■■□□□ 1.05
SRP54P61011 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.63■■□□□ 1.05
SRP54P61011 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SRP54P61011 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.63■■□□□ 1.05
SRP54P61011 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SRP54P61011 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.62■■□□□ 1.05
SRP54P61011 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.62■■□□□ 1.05
SRP54P61011 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.62■■□□□ 1.05
SRP54P61011 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SRP54P61011 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.62■■□□□ 1.05
SRP54P61011 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SRP54P61011 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.62■■□□□ 1.05
SRP54P61011 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SRP54P61011 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.62■■□□□ 1.05
SRP54P61011 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SRP54P61011 AC093323.1-202ENST00000635031 2045 ntBASIC21.62■■□□□ 1.05
SRP54P61011 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.61■■□□□ 1.05
SRP54P61011 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.61■■□□□ 1.05
SRP54P61011 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.61■■□□□ 1.05
SRP54P61011 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.61■■□□□ 1.05
SRP54P61011 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.61■■□□□ 1.05
SRP54P61011 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.61■■□□□ 1.05
SRP54P61011 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.61■■□□□ 1.05
SRP54P61011 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.61■■□□□ 1.05
SRP54P61011 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.61■■□□□ 1.05
SRP54P61011 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.61■■□□□ 1.05
SRP54P61011 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SRP54P61011 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.61■■□□□ 1.05
SRP54P61011 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms