Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.9■□□□□ 0.94
LIM2P55344 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIM2P55344 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
LIM2P55344 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIM2P55344 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIM2P55344 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIM2P55344 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
LIM2P55344 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIM2P55344 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
LIM2P55344 AL136162.1-201ENST00000607711 1078 ntBASIC20.89■□□□□ 0.93
LIM2P55344 EP400NL-214ENST00000641289 2402 ntBASIC20.89■□□□□ 0.93
LIM2P55344 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIM2P55344 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIM2P55344 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIM2P55344 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIM2P55344 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.88■□□□□ 0.93
LIM2P55344 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.88■□□□□ 0.93
LIM2P55344 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.88■□□□□ 0.93
LIM2P55344 AC024257.2-201ENST00000549699 147 ntBASIC20.88■□□□□ 0.93
LIM2P55344 AC136469.2-201ENST00000623944 1028 ntBASIC20.88■□□□□ 0.93
LIM2P55344 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.88■□□□□ 0.93
LIM2P55344 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIM2P55344 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.87■□□□□ 0.93
LIM2P55344 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIM2P55344 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIM2P55344 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LIM2P55344 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
LIM2P55344 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIM2P55344 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.87■□□□□ 0.93
LIM2P55344 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.87■□□□□ 0.93
LIM2P55344 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIM2P55344 AC110285.6-201ENST00000617652 491 ntBASIC20.87■□□□□ 0.93
LIM2P55344 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LIM2P55344 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.87■□□□□ 0.93
LIM2P55344 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LIM2P55344 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.87■□□□□ 0.93
LIM2P55344 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIM2P55344 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.86■□□□□ 0.93
LIM2P55344 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.86■□□□□ 0.93
LIM2P55344 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
LIM2P55344 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIM2P55344 AC135279.3-201ENST00000610945 1311 ntBASIC20.86■□□□□ 0.93
LIM2P55344 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIM2P55344 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIM2P55344 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.86■□□□□ 0.93
LIM2P55344 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.86■□□□□ 0.93
LIM2P55344 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.86■□□□□ 0.93
LIM2P55344 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIM2P55344 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIM2P55344 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 PBX2P1-201ENST00000493219 1291 ntBASIC20.85■□□□□ 0.93
LIM2P55344 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIM2P55344 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
LIM2P55344 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
LIM2P55344 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIM2P55344 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.85■□□□□ 0.93
LIM2P55344 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.85■□□□□ 0.93
LIM2P55344 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
LIM2P55344 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.84■□□□□ 0.93
LIM2P55344 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIM2P55344 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
LIM2P55344 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.84■□□□□ 0.93
LIM2P55344 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LIM2P55344 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LIM2P55344 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIM2P55344 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.84■□□□□ 0.93
LIM2P55344 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.84■□□□□ 0.93
LIM2P55344 MIR4767-201ENST00000582827 78 ntBASIC20.84■□□□□ 0.93
LIM2P55344 AC106739.1-201ENST00000617035 715 ntBASIC20.84■□□□□ 0.93
LIM2P55344 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIM2P55344 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LIM2P55344 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIM2P55344 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.84■□□□□ 0.93
LIM2P55344 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIM2P55344 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIM2P55344 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LIM2P55344 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.83■□□□□ 0.93
LIM2P55344 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.83■□□□□ 0.93
LIM2P55344 AL139246.5-201ENST00000606645 996 ntBASIC20.83■□□□□ 0.93
LIM2P55344 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LIM2P55344 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIM2P55344 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIM2P55344 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIM2P55344 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIM2P55344 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIM2P55344 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.82■□□□□ 0.92
LIM2P55344 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIM2P55344 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.82■□□□□ 0.92
LIM2P55344 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.82■□□□□ 0.92
LIM2P55344 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIM2P55344 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.82■□□□□ 0.92
LIM2P55344 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIM2P55344 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LIM2P55344 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms