Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.7■■□□□ 1.7
CTCFP49711 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC25.7■■□□□ 1.7
CTCFP49711 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
CTCFP49711 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC25.7■■□□□ 1.7
CTCFP49711 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC25.7■■□□□ 1.7
CTCFP49711 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CTCFP49711 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC25.7■■□□□ 1.7
CTCFP49711 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CTCFP49711 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.7■■□□□ 1.7
CTCFP49711 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTCFP49711 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTCFP49711 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
CTCFP49711 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
CTCFP49711 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CTCFP49711 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CTCFP49711 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CTCFP49711 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CTCFP49711 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC25.69■■□□□ 1.7
CTCFP49711 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
CTCFP49711 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CTCFP49711 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CTCFP49711 RARA-203ENST00000394086 2008 ntTSL 2 BASIC25.68■■□□□ 1.7
CTCFP49711 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTCFP49711 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTCFP49711 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTCFP49711 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC25.68■■□□□ 1.7
CTCFP49711 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CTCFP49711 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC25.68■■□□□ 1.7
CTCFP49711 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC25.68■■□□□ 1.7
CTCFP49711 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC25.68■■□□□ 1.7
CTCFP49711 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.68■■□□□ 1.7
CTCFP49711 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
CTCFP49711 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CTCFP49711 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.68■■□□□ 1.7
CTCFP49711 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.67■■□□□ 1.7
CTCFP49711 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CTCFP49711 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.67■■□□□ 1.7
CTCFP49711 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.67■■□□□ 1.7
CTCFP49711 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 AC008550.1-201ENST00000511500 884 ntBASIC25.67■■□□□ 1.7
CTCFP49711 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC25.67■■□□□ 1.7
CTCFP49711 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CTCFP49711 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CTCFP49711 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CTCFP49711 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC25.66■■□□□ 1.7
CTCFP49711 AC079140.4-201ENST00000507448 529 ntBASIC25.66■■□□□ 1.7
CTCFP49711 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC25.66■■□□□ 1.7
CTCFP49711 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.66■■□□□ 1.7
CTCFP49711 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC25.66■■□□□ 1.7
CTCFP49711 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.65■■□□□ 1.7
CTCFP49711 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.65■■□□□ 1.7
CTCFP49711 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 AC211429.1-201ENST00000415277 523 ntBASIC25.65■■□□□ 1.7
CTCFP49711 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC25.65■■□□□ 1.7
CTCFP49711 USP36-216ENST00000589424 970 ntTSL 5 BASIC25.65■■□□□ 1.7
CTCFP49711 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CTCFP49711 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CTCFP49711 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.64■■□□□ 1.7
CTCFP49711 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC25.64■■□□□ 1.7
CTCFP49711 PARP1-202ENST00000366792 553 ntTSL 3 BASIC25.64■■□□□ 1.7
CTCFP49711 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC25.64■■□□□ 1.7
CTCFP49711 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC25.64■■□□□ 1.7
CTCFP49711 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC25.64■■□□□ 1.7
CTCFP49711 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC25.64■■□□□ 1.7
CTCFP49711 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
CTCFP49711 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CTCFP49711 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CTCFP49711 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
CTCFP49711 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CTCFP49711 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.63■■□□□ 1.69
CTCFP49711 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CTCFP49711 PPP1R14BP2-201ENST00000426284 444 ntBASIC25.63■■□□□ 1.69
CTCFP49711 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CTCFP49711 AC006058.3-201ENST00000606217 1069 ntBASIC25.63■■□□□ 1.69
CTCFP49711 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.63■■□□□ 1.69
CTCFP49711 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.63■■□□□ 1.69
CTCFP49711 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CTCFP49711 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC25.63■■□□□ 1.69
CTCFP49711 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CTCFP49711 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CTCFP49711 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC25.62■■□□□ 1.69
CTCFP49711 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.62■■□□□ 1.69
CTCFP49711 GXYLT1P3-201ENST00000453058 1193 ntBASIC25.62■■□□□ 1.69
CTCFP49711 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CTCFP49711 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC25.62■■□□□ 1.69
CTCFP49711 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CTCFP49711 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
CTCFP49711 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
CTCFP49711 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CTCFP49711 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms