Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX2P48431 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
SOX2P48431 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX2P48431 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX2P48431 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX2P48431 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
SOX2P48431 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX2P48431 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX2P48431 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX2P48431 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX2P48431 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.28■□□□□ 0.68
SOX2P48431 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX2P48431 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX2P48431 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX2P48431 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX2P48431 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SOX2P48431 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.27■□□□□ 0.68
SOX2P48431 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
SOX2P48431 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX2P48431 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX2P48431 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX2P48431 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SOX2P48431 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SOX2P48431 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.27■□□□□ 0.68
SOX2P48431 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SOX2P48431 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SOX2P48431 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SOX2P48431 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SOX2P48431 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX2P48431 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SOX2P48431 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX2P48431 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.26■□□□□ 0.67
SOX2P48431 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SOX2P48431 SNX5-217ENST00000606557 1087 ntBASIC19.26■□□□□ 0.67
SOX2P48431 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.26■□□□□ 0.67
SOX2P48431 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.26■□□□□ 0.67
SOX2P48431 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.26■□□□□ 0.67
SOX2P48431 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX2P48431 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX2P48431 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.25■□□□□ 0.67
SOX2P48431 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SOX2P48431 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.25■□□□□ 0.67
SOX2P48431 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.25■□□□□ 0.67
SOX2P48431 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.25■□□□□ 0.67
SOX2P48431 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX2P48431 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SOX2P48431 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.24■□□□□ 0.67
SOX2P48431 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.24■□□□□ 0.67
SOX2P48431 TSPY13P-201ENST00000338964 914 ntBASIC19.24■□□□□ 0.67
SOX2P48431 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.24■□□□□ 0.67
SOX2P48431 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.24■□□□□ 0.67
SOX2P48431 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SOX2P48431 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SOX2P48431 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SOX2P48431 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.23■□□□□ 0.67
SOX2P48431 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.23■□□□□ 0.67
SOX2P48431 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.23■□□□□ 0.67
SOX2P48431 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.23■□□□□ 0.67
SOX2P48431 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX2P48431 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SOX2P48431 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SOX2P48431 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.23■□□□□ 0.67
SOX2P48431 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX2P48431 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX2P48431 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX2P48431 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SOX2P48431 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX2P48431 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms