Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.55■□□□□ 0.72
LIMS3P0CW19 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIMS3P0CW19 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.55■□□□□ 0.72
LIMS3P0CW19 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMS3P0CW19 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMS3P0CW19 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMS3P0CW19 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIMS3P0CW19 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMS3P0CW19 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIMS3P0CW19 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.54■□□□□ 0.72
LIMS3P0CW19 LINC01529-204ENST00000636474 1715 ntBASIC19.54■□□□□ 0.72
LIMS3P0CW19 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
LIMS3P0CW19 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.53■□□□□ 0.72
LIMS3P0CW19 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 DUX4L18-201ENST00000553347 1267 ntBASIC19.53■□□□□ 0.72
LIMS3P0CW19 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIMS3P0CW19 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMS3P0CW19 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMS3P0CW19 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMS3P0CW19 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIMS3P0CW19 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.52■□□□□ 0.72
LIMS3P0CW19 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIMS3P0CW19 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMS3P0CW19 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.52■□□□□ 0.71
LIMS3P0CW19 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMS3P0CW19 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIMS3P0CW19 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIMS3P0CW19 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMS3P0CW19 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMS3P0CW19 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMS3P0CW19 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LIMS3P0CW19 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
LIMS3P0CW19 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.51■□□□□ 0.71
LIMS3P0CW19 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIMS3P0CW19 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.51■□□□□ 0.71
LIMS3P0CW19 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LIMS3P0CW19 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
LIMS3P0CW19 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 AC244015.2-201ENST00000616358 1861 ntBASIC19.5■□□□□ 0.71
LIMS3P0CW19 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMS3P0CW19 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMS3P0CW19 SNX5-217ENST00000606557 1087 ntBASIC19.5■□□□□ 0.71
LIMS3P0CW19 PVT1_1.1-201ENST00000615125 194 ntBASIC19.5■□□□□ 0.71
LIMS3P0CW19 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMS3P0CW19 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIMS3P0CW19 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMS3P0CW19 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMS3P0CW19 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMS3P0CW19 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms