Protein–RNA interactions for Protein: O00370

LINE-1 retrotransposable element ORF2 protein, humanhuman

Predictions only

Length 1,275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
O00370 MDC1-209ENST00000613547 830 ntTSL 5 BASIC14.03□□□□□ -0.16
O00370 AC073592.2-201ENST00000623062 780 ntBASIC14.03□□□□□ -0.16
O00370 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.03□□□□□ -0.16
O00370 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC14.03□□□□□ -0.16
O00370 R3HDM2-215ENST00000634871 4092 ntTSL 5 BASIC14.03□□□□□ -0.16
O00370 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
O00370 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC14.03□□□□□ -0.16
O00370 TAF7L-202ENST00000356784 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC14.03□□□□□ -0.16
O00370 C3orf56-201ENST00000624688 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 AC068580.3-201ENST00000449248 2015 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 LINC01801-202ENST00000590963 2077 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 LIPC-202ENST00000356113 2161 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
O00370 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.03□□□□□ -0.16
O00370 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 CTNS-201ENST00000046640 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 ZNF287-202ENST00000395825 3208 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
O00370 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
O00370 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
O00370 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
O00370 EPB41L2-204ENST00000392427 3369 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
O00370 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
O00370 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC14.02□□□□□ -0.16
O00370 AL031666.1-201ENST00000413818 1809 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC14.02□□□□□ -0.16
O00370 LINGO1-AS1-201ENST00000558691 1720 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
O00370 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
O00370 AC020914.1-201ENST00000396477 1476 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
O00370 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.02□□□□□ -0.16
O00370 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
O00370 SIRPB3P-201ENST00000340424 1216 ntBASIC14.02□□□□□ -0.17
O00370 PIFO-201ENST00000369737 746 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 BICD1P1-201ENST00000457832 1222 ntBASIC14.02□□□□□ -0.17
O00370 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC14.02□□□□□ -0.17
O00370 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
O00370 AC078814.4-201ENST00000546650 327 ntBASIC14.02□□□□□ -0.17
O00370 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC14.02□□□□□ -0.17
O00370 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
O00370 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
O00370 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
O00370 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
O00370 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC14.02□□□□□ -0.17
O00370 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
O00370 AC136604.2-201ENST00000500262 1966 ntTSL 2 BASIC14.02□□□□□ -0.17
O00370 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
O00370 CHRNA7-223ENST00000637033 3204 ntTSL 5 BASIC14.02□□□□□ -0.17
O00370 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 MOB3C-201ENST00000271139 2800 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 AC096564.1-201ENST00000499098 2810 ntTSL 2 BASIC14.01□□□□□ -0.17
O00370 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC14.01□□□□□ -0.17
O00370 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 DRD3-204ENST00000467632 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 MYO1D-206ENST00000579584 3500 ntTSL 2 BASIC14.01□□□□□ -0.17
O00370 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC14.01□□□□□ -0.17
O00370 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 FAM90A21P-201ENST00000510875 1396 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A15P-201ENST00000514465 1395 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A6P-201ENST00000515148 1394 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A16P-201ENST00000526662 1395 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A9P-201ENST00000527940 1395 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A5P-201ENST00000528738 1395 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A14P-201ENST00000530386 1395 ntBASIC14.01□□□□□ -0.17
O00370 FAM90A13P-201ENST00000534703 1395 ntBASIC14.01□□□□□ -0.17
O00370 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
O00370 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms