Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.56■□□□□ 0.88
VCX3AQ9NNX9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 AC126177.7-201ENST00000547904 679 ntBASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3AQ9NNX9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
VCX3AQ9NNX9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.53■□□□□ 0.88
VCX3AQ9NNX9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 AC005229.4-201ENST00000610085 2198 ntBASIC20.52■□□□□ 0.88
VCX3AQ9NNX9 AL161729.1-201ENST00000604104 1402 ntBASIC20.52■□□□□ 0.87
VCX3AQ9NNX9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.52■□□□□ 0.87
VCX3AQ9NNX9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VCX3AQ9NNX9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3AQ9NNX9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
VCX3AQ9NNX9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 AC139530.1-201ENST00000575312 1977 ntBASIC20.49■□□□□ 0.87
VCX3AQ9NNX9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.48■□□□□ 0.87
VCX3AQ9NNX9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3AQ9NNX9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
VCX3AQ9NNX9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.48■□□□□ 0.87
VCX3AQ9NNX9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3AQ9NNX9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3AQ9NNX9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms