Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.37■□□□□ 0.69
LIME1Q9H400 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
LIME1Q9H400 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
LIME1Q9H400 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.37■□□□□ 0.69
LIME1Q9H400 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIME1Q9H400 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIME1Q9H400 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIME1Q9H400 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
LIME1Q9H400 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.37■□□□□ 0.69
LIME1Q9H400 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIME1Q9H400 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIME1Q9H400 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.36■□□□□ 0.69
LIME1Q9H400 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.36■□□□□ 0.69
LIME1Q9H400 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.36■□□□□ 0.69
LIME1Q9H400 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIME1Q9H400 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.36■□□□□ 0.69
LIME1Q9H400 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.36■□□□□ 0.69
LIME1Q9H400 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
LIME1Q9H400 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.35■□□□□ 0.69
LIME1Q9H400 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIME1Q9H400 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIME1Q9H400 AC027612.3-201ENST00000413684 1047 ntBASIC19.35■□□□□ 0.69
LIME1Q9H400 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIME1Q9H400 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.35■□□□□ 0.69
LIME1Q9H400 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.35■□□□□ 0.69
LIME1Q9H400 CCDC92B-201ENST00000575506 885 ntBASIC19.35■□□□□ 0.69
LIME1Q9H400 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.35■□□□□ 0.69
LIME1Q9H400 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIME1Q9H400 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.35■□□□□ 0.69
LIME1Q9H400 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.35■□□□□ 0.69
LIME1Q9H400 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIME1Q9H400 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIME1Q9H400 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.34■□□□□ 0.69
LIME1Q9H400 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIME1Q9H400 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIME1Q9H400 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LIME1Q9H400 AC123595.1-201ENST00000440769 1046 ntBASIC19.34■□□□□ 0.69
LIME1Q9H400 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.34■□□□□ 0.69
LIME1Q9H400 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.34■□□□□ 0.69
LIME1Q9H400 NTF6G-201ENST00000591094 616 ntBASIC19.34■□□□□ 0.69
LIME1Q9H400 AL358852.1-201ENST00000623174 1268 ntBASIC19.34■□□□□ 0.69
LIME1Q9H400 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.34■□□□□ 0.69
LIME1Q9H400 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIME1Q9H400 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIME1Q9H400 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.34■□□□□ 0.69
LIME1Q9H400 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
LIME1Q9H400 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.33■□□□□ 0.69
LIME1Q9H400 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIME1Q9H400 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIME1Q9H400 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.33■□□□□ 0.68
LIME1Q9H400 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.33■□□□□ 0.68
LIME1Q9H400 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
LIME1Q9H400 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 AC079834.2-201ENST00000609776 1949 ntBASIC19.33■□□□□ 0.68
LIME1Q9H400 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIME1Q9H400 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.33■□□□□ 0.68
LIME1Q9H400 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIME1Q9H400 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.32■□□□□ 0.68
LIME1Q9H400 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.32■□□□□ 0.68
LIME1Q9H400 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIME1Q9H400 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.32■□□□□ 0.68
LIME1Q9H400 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIME1Q9H400 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.32■□□□□ 0.68
LIME1Q9H400 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.31■□□□□ 0.68
LIME1Q9H400 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIME1Q9H400 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.31■□□□□ 0.68
LIME1Q9H400 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.31■□□□□ 0.68
LIME1Q9H400 HLA-L-209ENST00000420110 1011 ntBASIC19.31■□□□□ 0.68
LIME1Q9H400 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LIME1Q9H400 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIME1Q9H400 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIME1Q9H400 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms