Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.25■□□□□ 0.83
TIMP4Q99727 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
TIMP4Q99727 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.25■□□□□ 0.83
TIMP4Q99727 AL136967.2-201ENST00000623968 743 ntBASIC20.25■□□□□ 0.83
TIMP4Q99727 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.24■□□□□ 0.83
TIMP4Q99727 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 MIR3181-201ENST00000578512 73 ntBASIC20.24■□□□□ 0.83
TIMP4Q99727 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TIMP4Q99727 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TIMP4Q99727 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.23■□□□□ 0.83
TIMP4Q99727 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TIMP4Q99727 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.23■□□□□ 0.83
TIMP4Q99727 AF213884.3-201ENST00000563833 479 ntBASIC20.23■□□□□ 0.83
TIMP4Q99727 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.23■□□□□ 0.83
TIMP4Q99727 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TIMP4Q99727 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TIMP4Q99727 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TIMP4Q99727 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
TIMP4Q99727 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.22■□□□□ 0.83
TIMP4Q99727 MIR939-201ENST00000401314 82 ntBASIC20.22■□□□□ 0.83
TIMP4Q99727 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.22■□□□□ 0.83
TIMP4Q99727 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.22■□□□□ 0.83
TIMP4Q99727 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.22■□□□□ 0.83
TIMP4Q99727 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TIMP4Q99727 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 AP001330.3-201ENST00000520123 633 ntBASIC20.21■□□□□ 0.83
TIMP4Q99727 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.21■□□□□ 0.83
TIMP4Q99727 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.21■□□□□ 0.83
TIMP4Q99727 AC136469.2-201ENST00000623944 1028 ntBASIC20.21■□□□□ 0.83
TIMP4Q99727 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
TIMP4Q99727 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.21■□□□□ 0.83
TIMP4Q99727 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TIMP4Q99727 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.21■□□□□ 0.83
TIMP4Q99727 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TIMP4Q99727 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.2■□□□□ 0.82
TIMP4Q99727 ZNRF2P3-201ENST00000424200 374 ntBASIC20.2■□□□□ 0.82
TIMP4Q99727 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.2■□□□□ 0.82
TIMP4Q99727 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.2■□□□□ 0.82
TIMP4Q99727 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TIMP4Q99727 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TIMP4Q99727 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
TIMP4Q99727 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.19■□□□□ 0.82
TIMP4Q99727 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TIMP4Q99727 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TIMP4Q99727 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.19■□□□□ 0.82
TIMP4Q99727 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TIMP4Q99727 pRNA.6-201ENST00000610482 90 ntBASIC20.19■□□□□ 0.82
TIMP4Q99727 pRNA.5-201ENST00000612139 90 ntBASIC20.19■□□□□ 0.82
TIMP4Q99727 pRNA.11-201ENST00000618423 90 ntBASIC20.19■□□□□ 0.82
TIMP4Q99727 pRNA.13-201ENST00000619112 90 ntBASIC20.19■□□□□ 0.82
TIMP4Q99727 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
TIMP4Q99727 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TIMP4Q99727 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.18■□□□□ 0.82
TIMP4Q99727 LINC00526-201ENST00000581067 1875 ntBASIC20.18■□□□□ 0.82
TIMP4Q99727 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TIMP4Q99727 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms