Protein–RNA interactions for Protein: Q969T4

UBE2E3, Ubiquitin-conjugating enzyme E2 E3, humanhuman

Predictions only

Length 207 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2E3Q969T4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE2E3Q969T4 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
UBE2E3Q969T4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE2E3Q969T4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.2■□□□□ 0.98
UBE2E3Q969T4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
UBE2E3Q969T4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.19■□□□□ 0.98
UBE2E3Q969T4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 pRNA.6-201ENST00000610482 90 ntBASIC21.18■□□□□ 0.98
UBE2E3Q969T4 pRNA.5-201ENST00000612139 90 ntBASIC21.18■□□□□ 0.98
UBE2E3Q969T4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 pRNA.11-201ENST00000618423 90 ntBASIC21.18■□□□□ 0.98
UBE2E3Q969T4 pRNA.13-201ENST00000619112 90 ntBASIC21.18■□□□□ 0.98
UBE2E3Q969T4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE2E3Q969T4 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 DUX4L19-201ENST00000557448 1267 ntBASIC21.17■□□□□ 0.98
UBE2E3Q969T4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
UBE2E3Q969T4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 AC006455.2-201ENST00000429931 906 ntBASIC21.16■□□□□ 0.98
UBE2E3Q969T4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.16■□□□□ 0.98
UBE2E3Q969T4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 AC127496.7-201ENST00000625110 1798 ntBASIC21.15■□□□□ 0.98
UBE2E3Q969T4 AC133637.1-201ENST00000624115 1537 ntBASIC21.15■□□□□ 0.98
UBE2E3Q969T4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 AL117328.2-201ENST00000624617 1940 ntBASIC21.15■□□□□ 0.98
UBE2E3Q969T4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
UBE2E3Q969T4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE2E3Q969T4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE2E3Q969T4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
UBE2E3Q969T4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.14■□□□□ 0.98
UBE2E3Q969T4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.14■□□□□ 0.98
UBE2E3Q969T4 LINC01960-201ENST00000563759 1884 ntBASIC21.14■□□□□ 0.97
UBE2E3Q969T4 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.14■□□□□ 0.97
UBE2E3Q969T4 AC131281.2-201ENST00000520478 145 ntBASIC21.14■□□□□ 0.97
UBE2E3Q969T4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.14■□□□□ 0.97
UBE2E3Q969T4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.14■□□□□ 0.97
UBE2E3Q969T4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UBE2E3Q969T4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
UBE2E3Q969T4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
UBE2E3Q969T4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.14■□□□□ 0.97
UBE2E3Q969T4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.13■□□□□ 0.97
UBE2E3Q969T4 MIR4466-201ENST00000606121 54 ntBASIC21.13■□□□□ 0.97
UBE2E3Q969T4 AL138724.1-201ENST00000606771 1088 ntBASIC21.13■□□□□ 0.97
UBE2E3Q969T4 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms