Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 AC123595.1-201ENST00000440769 1046 ntBASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 AL354811.1-201ENST00000610286 706 ntBASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
SHKBP1Q8TBC3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SHKBP1Q8TBC3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHKBP1Q8TBC3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 AC022517.1-201ENST00000592429 346 ntBASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 IKBKGP1-201ENST00000612193 1073 ntBASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHKBP1Q8TBC3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 AP005435.1-201ENST00000529293 1178 ntBASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHKBP1Q8TBC3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.19■■□□□ 1.3
SHKBP1Q8TBC3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 CCDC92B-201ENST00000575506 885 ntBASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.18■■□□□ 1.3
SHKBP1Q8TBC3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 LINC00543-201ENST00000567234 1845 ntBASIC23.17■■□□□ 1.3
SHKBP1Q8TBC3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
SHKBP1Q8TBC3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms