Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 HLA-L-209ENST00000420110 1011 ntBASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
SYNPOQ8N3V7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
SYNPOQ8N3V7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 AC016769.1-201ENST00000409132 1010 ntBASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SYNPOQ8N3V7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 AC137761.2-201ENST00000561729 223 ntBASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 AC145350.3-201ENST00000569033 163 ntBASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SYNPOQ8N3V7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 TPRG1LP1-201ENST00000598702 760 ntBASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
SYNPOQ8N3V7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 AC068587.7-201ENST00000641602 218 ntBASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.48■■□□□ 1.19
SYNPOQ8N3V7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 RAP2CP1-201ENST00000605103 478 ntBASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
SYNPOQ8N3V7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
SYNPOQ8N3V7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
SYNPOQ8N3V7 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SYNPOQ8N3V7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.45■■□□□ 1.18
SYNPOQ8N3V7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SYNPOQ8N3V7 CDCA4P2-201ENST00000441182 718 ntBASIC22.45■■□□□ 1.18
SYNPOQ8N3V7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.45■■□□□ 1.18
SYNPOQ8N3V7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SYNPOQ8N3V7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms