Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
LINC00643Q86TS7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 FAM99A-202ENST00000538190 1989 ntBASIC13.87□□□□□ -0.19
LINC00643Q86TS7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 EBPL-203ENST00000378270 579 ntTSL 2 BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC13.87□□□□□ -0.19
LINC00643Q86TS7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LINC00643Q86TS7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 MIR6089-201ENST00000616698 64 ntBASIC13.86□□□□□ -0.19
LINC00643Q86TS7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 AC135983.2-203ENST00000454486 1613 ntBASIC13.86□□□□□ -0.19
LINC00643Q86TS7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LINC00643Q86TS7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00643Q86TS7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC13.84□□□□□ -0.19
LINC00643Q86TS7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
LINC00643Q86TS7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
LINC00643Q86TS7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00643Q86TS7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00643Q86TS7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC13.83□□□□□ -0.19
LINC00643Q86TS7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC13.83□□□□□ -0.2
LINC00643Q86TS7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms