Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
YBX1P67809 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
YBX1P67809 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
YBX1P67809 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
YBX1P67809 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.54■■□□□ 1.04
YBX1P67809 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
YBX1P67809 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.54■■□□□ 1.04
YBX1P67809 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
YBX1P67809 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
YBX1P67809 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
YBX1P67809 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
YBX1P67809 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
YBX1P67809 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.53■■□□□ 1.04
YBX1P67809 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.53■■□□□ 1.04
YBX1P67809 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
YBX1P67809 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.53■■□□□ 1.04
YBX1P67809 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
YBX1P67809 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
YBX1P67809 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.52■■□□□ 1.04
YBX1P67809 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.52■■□□□ 1.04
YBX1P67809 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.52■■□□□ 1.04
YBX1P67809 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.52■■□□□ 1.04
YBX1P67809 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.52■■□□□ 1.04
YBX1P67809 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
YBX1P67809 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.52■■□□□ 1.04
YBX1P67809 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.52■■□□□ 1.04
YBX1P67809 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.52■■□□□ 1.04
YBX1P67809 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.52■■□□□ 1.04
YBX1P67809 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.52■■□□□ 1.04
YBX1P67809 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
YBX1P67809 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
YBX1P67809 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
YBX1P67809 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
YBX1P67809 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.03
YBX1P67809 LINC00526-201ENST00000581067 1875 ntBASIC21.52■■□□□ 1.03
YBX1P67809 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
YBX1P67809 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
YBX1P67809 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
YBX1P67809 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
YBX1P67809 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
YBX1P67809 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.51■■□□□ 1.03
YBX1P67809 LINC01529-204ENST00000636474 1715 ntBASIC21.51■■□□□ 1.03
YBX1P67809 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.51■■□□□ 1.03
YBX1P67809 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
YBX1P67809 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
YBX1P67809 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
YBX1P67809 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
YBX1P67809 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.5■■□□□ 1.03
YBX1P67809 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
YBX1P67809 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
YBX1P67809 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
YBX1P67809 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.5■■□□□ 1.03
YBX1P67809 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
YBX1P67809 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
YBX1P67809 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
YBX1P67809 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
YBX1P67809 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
YBX1P67809 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
YBX1P67809 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.49■■□□□ 1.03
YBX1P67809 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
YBX1P67809 AC096631.2-201ENST00000436136 790 ntBASIC21.49■■□□□ 1.03
YBX1P67809 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.49■■□□□ 1.03
YBX1P67809 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.49■■□□□ 1.03
YBX1P67809 AC009086.3-201ENST00000623486 1008 ntBASIC21.49■■□□□ 1.03
YBX1P67809 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
YBX1P67809 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
YBX1P67809 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
YBX1P67809 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
YBX1P67809 FP325331.1-202ENST00000623531 1380 ntBASIC21.48■■□□□ 1.03
YBX1P67809 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.48■■□□□ 1.03
YBX1P67809 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.48■■□□□ 1.03
YBX1P67809 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
YBX1P67809 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 SERBP1P1-201ENST00000396021 1160 ntBASIC21.48■■□□□ 1.03
YBX1P67809 DUX4L4-201ENST00000566884 1269 ntBASIC21.48■■□□□ 1.03
YBX1P67809 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.48■■□□□ 1.03
YBX1P67809 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.48■■□□□ 1.03
YBX1P67809 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
YBX1P67809 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms